Information for 22-WAACTGTATTGG (Motif 36)


Reverse Opposite:

p-value:1e-5
log p-value:-1.353e+01
Information Content per bp:1.486
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.22%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets359.1 +/- 212.1bp
Average Position of motif in Background787.9 +/- 197.4bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)2.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0057.1_Hoxb13/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-WAACTGTATTGG---
NNAATTTTATTGGNTN

PB0068.1_Sox1_1/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--WAACTGTATTGG--
NNNTATTGAATTGNNN

PH0075.1_Hoxd10/Jaspar

Match Rank:3
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--WAACTGTATTGG---
NTNAATTTTATTGNATT

PH0078.1_Hoxd13/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-WAACTGTATTGG---
NNANTTTTATTGGNNN

PB0091.1_Zbtb3_1/Jaspar

Match Rank:5
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----WAACTGTATTGG-
AATCGCACTGCATTCCG

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:WAACTGTATTGG
TAATYNRATTAR

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:WAACTGTATTGG
NNTGTGGATTSS

PB0005.1_Bbx_1/Jaspar

Match Rank:8
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----WAACTGTATTGG
NANTTCATTGAATTA-

MA0479.1_FOXH1/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:WAACTGTATTGG-
--TGTGGATTNNN

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:WAACTGTATTGG-
---TTTTATTRGN