Information for 25-CTGTCTCGGG (Motif 37)


Reverse Opposite:

p-value:1e-5
log p-value:-1.251e+01
Information Content per bp:1.530
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif47.7
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets489.9 +/- 301.7bp
Average Position of motif in Background553.4 +/- 322.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CTGTCTCGGG
CTGTCTGG--

PB0140.1_Irf6_2/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CTGTCTCGGG---
ACCACTCTCGGTCAC

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CTGTCTCGGG---
NNTNNTGTCTGGNNTNG

PB0138.1_Irf4_2/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CTGTCTCGGG---
AGTATTCTCGGTTGC

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CTGTCTCGGG
VBSYGTCTGG--

MA0155.1_INSM1/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CTGTCTCGGG---
-TGTCAGGGGGCG

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTGTCTCGGG
GCTGTG-----

MA0527.1_ZBTB33/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CTGTCTCGGG-------
--CTCTCGCGAGATCTG

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CTGTCTCGGG
CTGTTCCTGG

GFX(?)/Promoter/Homer

Match Rank:10
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CTGTCTCGGG-----
---TCTCGCGAGAAT