Information for 4-CCCGCCAATT (Motif 5)


Reverse Opposite:

p-value:1e-12
log p-value:-2.957e+01
Information Content per bp:1.710
Number of Target Sequences with motif399.0
Percentage of Target Sequences with motif14.59%
Number of Background Sequences with motif4180.8
Percentage of Background Sequences with motif9.98%
Average Position of motif in Targets703.3 +/- 284.8bp
Average Position of motif in Background660.0 +/- 341.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0164.1_Smad3_2/Jaspar

Match Rank:1
Score:0.80
Offset:-5
Orientation:forward strand
Alignment:-----CCCGCCAATT--
TACGCCCCGCCACTCTG

PH0109.1_Nkx1-1/Jaspar

Match Rank:2
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CCCGCCAATT------
NCCCACTAATTAGCGCA

POL006.1_BREu/Jaspar

Match Rank:3
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CCCGCCAATT
AGCGCGCC----

MA0161.1_NFIC/Jaspar

Match Rank:4
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CCCGCCAATT
--TGCCAA--

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:5
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CCCGCCAATT
VDTTTCCCGCCA---

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:6
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CCCGCCAATT
TTCCCGCCWG--

MA0470.1_E2F4/Jaspar

Match Rank:7
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----CCCGCCAATT
NNTTCCCGCCC---

E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----CCCGCCAATT
DTTTCCCGCC----

MA0516.1_SP2/Jaspar

Match Rank:9
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCCGCCAATT---
GCCCCGCCCCCTCCC

PH0098.1_Lhx8/Jaspar

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CCCGCCAATT------
CACCGCTAATTAGNNGN