Information for 4-ACTKGAATTGGG (Motif 6)


Reverse Opposite:

p-value:1e-12
log p-value:-2.844e+01
Information Content per bp:1.529
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif1.68%
Number of Background Sequences with motif179.2
Percentage of Background Sequences with motif0.43%
Average Position of motif in Targets449.4 +/- 263.1bp
Average Position of motif in Background485.7 +/- 267.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0161.1_NFIC/Jaspar

Match Rank:1
Score:0.62
Offset:7
Orientation:forward strand
Alignment:ACTKGAATTGGG-
-------TTGGCA

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:2
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:ACTKGAATTGGG
--TGACCTTGAN

MA0133.1_BRCA1/Jaspar

Match Rank:3
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:ACTKGAATTGGG
----GTGTTGN-

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---ACTKGAATTGGG-
NNTGTTTATTTTGGCA

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:5
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:ACTKGAATTGGG
--TGACCTTGAV

MA0479.1_FOXH1/Jaspar

Match Rank:6
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:ACTKGAATTGGG
-TGTGGATTNNN

MA0505.1_Nr5a2/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:ACTKGAATTGGG---
GCTGACCTTGAACTN

ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:ACTKGAATTGGG
ACAGGATGTGGT

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-ACTKGAATTGGG
NNTGTGGATTSS-

POL002.1_INR/Jaspar

Match Rank:10
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:ACTKGAATTGGG
---NNNANTGA-