Information for 5-CCTGACTCCGAC (Motif 7)


Reverse Opposite:

p-value:1e-12
log p-value:-2.805e+01
Information Content per bp:1.853
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif64.5
Percentage of Background Sequences with motif0.15%
Average Position of motif in Targets565.6 +/- 267.1bp
Average Position of motif in Background571.1 +/- 325.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0203.1_Zfp691_2/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCTGACTCCGAC---
TACGAGACTCCTCTAAC

PH0164.1_Six4/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CCTGACTCCGAC--
ATAAATGACACCTATCA

PB0057.1_Rxra_1/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CCTGACTCCGAC--
TGTCGTGACCCCTTAAT

PB0153.1_Nr2f2_2/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CCTGACTCCGAC--
NNNNTGACCCGGCGCG

PB0157.1_Rara_2/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CCTGACTCCGAC--
NNCNTGACCCCGCTCT

MA0099.2_JUN::FOS/Jaspar

Match Rank:6
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CCTGACTCCGAC
--TGACTCA---

PB0118.1_Esrra_2/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CCTGACTCCGAC--
NNNNTTGACCCCTNNNN

POL013.1_MED-1/Jaspar

Match Rank:8
Score:0.55
Offset:4
Orientation:forward strand
Alignment:CCTGACTCCGAC
----GCTCCG--

PB0030.1_Hnf4a_1/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CCTGACTCCGAC--
NNANTTGACCCCTNNNN

AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CCTGACTCCGAC
-ATGACTCATC-