Information for 5-CGAGTCAAGT (Motif 8)


Reverse Opposite:

p-value:1e-11
log p-value:-2.725e+01
Information Content per bp:1.647
Number of Target Sequences with motif127.0
Percentage of Target Sequences with motif4.65%
Number of Background Sequences with motif952.9
Percentage of Background Sequences with motif2.28%
Average Position of motif in Targets626.7 +/- 287.1bp
Average Position of motif in Background593.5 +/- 349.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.67
Offset:1
Orientation:forward strand
Alignment:CGAGTCAAGT--
-AAGGCAAGTGT

MA0099.2_JUN::FOS/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CGAGTCAAGT
TGAGTCA---

PB0203.1_Zfp691_2/Jaspar

Match Rank:3
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------CGAGTCAAGT-
NTNNNAGGAGTCTCNTN

PB0153.1_Nr2f2_2/Jaspar

Match Rank:4
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CGAGTCAAGT-
CGCGCCGGGTCACGTA

PB0157.1_Rara_2/Jaspar

Match Rank:5
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CGAGTCAAGT-
AGAGCGGGGTCAAGTA

MA0067.1_Pax2/Jaspar

Match Rank:6
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CGAGTCAAGT
--AGTCACGC

AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CGAGTCAAGT
GATGAGTCAT--

E-box(bHLH)/Promoter/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CGAGTCAAGT--
CCGGTCACGTGA

Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer

Match Rank:9
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CGAGTCAAGT
TGCTGAGTCA---

BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CGAGTCAAGT
DATGASTCAT--