Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 2734)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 41883)	% of Background Sequences with Motif
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-15	-3.520e+01	0.0000	1345.0	49.20%	17306.2	41.32%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-13	-3.197e+01	0.0000	1297.0	47.44%	16750.2	39.99%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-12	-2.881e+01	0.0000	1226.0	44.84%	15857.8	37.86%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-11	-2.696e+01	0.0000	243.0	8.89%	2293.4	5.48%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-9	-2.282e+01	0.0000	1319.0	48.24%	17601.4	42.02%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-9	-2.270e+01	0.0000	834.0	30.50%	10457.3	24.97%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-9	-2.242e+01	0.0000	1168.0	42.72%	15362.5	36.68%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-9	-2.159e+01	0.0000	1612.0	58.96%	22164.1	52.92%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-8	-1.922e+01	0.0000	1628.0	59.55%	22573.9	53.90%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-5	-1.341e+01	0.0000	1320.0	48.28%	18292.2	43.67%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-5	-1.299e+01	0.0001	258.0	9.44%	2929.9	7.00%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-5	-1.189e+01	0.0002	617.0	22.57%	8000.8	19.10%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-4	-1.141e+01	0.0002	871.0	31.86%	11739.4	28.03%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-4	-1.128e+01	0.0002	258.0	9.44%	3005.1	7.17%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-4	-1.024e+01	0.0006	1954.0	71.47%	28409.5	67.83%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-4	-1.009e+01	0.0007	1317.0	48.17%	18549.0	44.29%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-4	-9.483e+00	0.0012	1158.0	42.36%	16199.3	38.68%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-3	-9.088e+00	0.0017	1262.0	46.16%	17813.2	42.53%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-3	-8.873e+00	0.0019	218.0	7.97%	2579.6	6.16%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-3	-8.715e+00	0.0022	597.0	21.84%	7952.4	18.99%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-3	-8.547e+00	0.0024	452.0	16.53%	5874.8	14.03%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-3	-8.472e+00	0.0025	186.0	6.80%	2166.0	5.17%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-3	-7.999e+00	0.0039	1037.0	37.93%	14531.6	34.69%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-3	-7.507e+00	0.0060	1586.0	58.01%	22950.0	54.79%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-3	-7.141e+00	0.0084	1060.0	38.77%	14972.3	35.75%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-2	-6.181e+00	0.0210	164.0	6.00%	1982.7	4.73%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-2	-5.696e+00	0.0329	367.0	13.42%	4881.6	11.65%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-2	-5.526e+00	0.0375	555.0	20.30%	7636.7	18.23%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-2	-5.402e+00	0.0410	389.0	14.23%	5225.2	12.48%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-2	-5.030e+00	0.0576	480.0	17.56%	6588.4	15.73%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-2	-5.022e+00	0.0576	444.0	16.24%	6062.9	14.48%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-1	-4.470e+00	0.0944	708.0	25.90%	10029.1	23.94%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-1	-4.396e+00	0.0986	761.0	27.83%	10831.7	25.86%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-1	-4.100e+00	0.1287	285.0	10.42%	3841.7	9.17%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-4.078e+00	0.1287	729.0	26.66%	10397.7	24.82%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-1	-3.973e+00	0.1380	362.0	13.24%	4974.0	11.88%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-3.838e+00	0.1537	1114.0	40.75%	16241.8	38.78%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-3.672e+00	0.1767	595.0	21.76%	8454.5	20.19%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-1	-3.612e+00	0.1827	1851.0	67.70%	27596.3	65.89%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-3.547e+00	0.1902	47.0	1.72%	529.7	1.26%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-3.292e+00	0.2394	1200.0	43.89%	17646.1	42.13%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-3.089e+00	0.2863	430.0	15.73%	6083.3	14.52%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-1	-3.020e+00	0.2997	79.0	2.89%	989.0	2.36%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-2.976e+00	0.3059	416.0	15.22%	5891.3	14.07%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-1	-2.889e+00	0.3264	119.0	4.35%	1561.6	3.73%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-2.869e+00	0.3264	86.0	3.15%	1096.3	2.62%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-1	-2.805e+00	0.3400	226.0	8.27%	3114.5	7.44%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-2.780e+00	0.3412	602.0	22.02%	8696.9	20.76%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-1	-2.761e+00	0.3412	657.0	24.03%	9525.9	22.74%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-1	-2.588e+00	0.3968	1513.0	55.34%	22578.2	53.91%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-1	-2.435e+00	0.4532	414.0	15.14%	5941.8	14.19%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-1	-2.408e+00	0.4571	327.0	11.96%	4651.7	11.11%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-1	-2.355e+00	0.4728	1785.0	65.29%	26818.2	64.03%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.238e+00	0.5216	117.0	4.28%	1586.3	3.79%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-2.229e+00	0.5216	141.0	5.16%	1935.1	4.62%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-2.188e+00	0.5287	460.0	16.83%	6670.9	15.93%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-2.154e+00	0.5374	140.0	5.12%	1928.4	4.60%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-2.148e+00	0.5374	341.0	12.47%	4898.6	11.70%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-2.085e+00	0.5563	260.0	9.51%	3703.5	8.84%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-2.068e+00	0.5565	710.0	25.97%	10459.3	24.97%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-2.049e+00	0.5575	1512.0	55.30%	22689.1	54.17%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.961e+00	0.5990	1248.0	45.65%	18668.8	44.57%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.946e+00	0.5990	479.0	17.52%	7000.9	16.71%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.935e+00	0.5990	1482.0	54.21%	22258.1	53.14%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.924e+00	0.5990	648.0	23.70%	9553.4	22.81%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.911e+00	0.5990	280.0	10.24%	4026.3	9.61%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.796e+00	0.6537	87.0	3.18%	1191.1	2.84%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.704e+00	0.7066	195.0	7.13%	2792.5	6.67%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.615e+00	0.7613	17.0	0.62%	204.8	0.49%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.613e+00	0.7613	271.0	9.91%	3940.5	9.41%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.602e+00	0.7613	1450.0	53.04%	21860.5	52.19%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.598e+00	0.7613	78.0	2.85%	1078.6	2.58%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.572e+00	0.7613	16.0	0.59%	192.4	0.46%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.493e+00	0.8014	269.0	9.84%	3931.6	9.39%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.466e+00	0.8126	170.0	6.22%	2454.4	5.86%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.466e+00	0.8126	183.0	6.69%	2648.1	6.32%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.421e+00	0.8275	1274.0	46.60%	19220.7	45.89%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.396e+00	0.8376	208.0	7.61%	3033.7	7.24%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.351e+00	0.8659	307.0	11.23%	4530.9	10.82%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.317e+00	0.8843	126.0	4.61%	1819.7	4.34%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-1.298e+00	0.8897	777.0	28.42%	11672.3	27.87%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.271e+00	0.9034	1333.0	48.76%	20173.2	48.16%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.257e+00	0.9034	53.0	1.94%	743.4	1.77%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.257e+00	0.9034	53.0	1.94%	743.4	1.77%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.203e+00	0.9331	356.0	13.02%	5303.1	12.66%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.196e+00	0.9331	1885.0	68.95%	28670.9	68.45%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-1.166e+00	0.9457	364.0	13.31%	5433.9	12.97%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-1.148e+00	0.9520	604.0	22.09%	9084.0	21.69%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.102e+00	0.9855	9.0	0.33%	113.7	0.27%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.083e+00	0.9932	783.0	28.64%	11833.3	28.25%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.075e+00	0.9932	343.0	12.55%	5137.0	12.26%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-9.949e-01	1.0000	133.0	4.86%	1973.5	4.71%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-9.607e-01	1.0000	725.0	26.52%	10992.0	26.24%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-9.567e-01	1.0000	91.0	3.33%	1345.7	3.21%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-9.440e-01	1.0000	486.0	17.78%	7350.5	17.55%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-9.292e-01	1.0000	47.0	1.72%	686.3	1.64%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-9.247e-01	1.0000	509.0	18.62%	7707.2	18.40%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-8.740e-01	1.0000	456.0	16.68%	6915.8	16.51%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-8.702e-01	1.0000	41.0	1.50%	602.3	1.44%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-8.692e-01	1.0000	423.0	15.47%	6413.8	15.31%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-8.649e-01	1.0000	319.0	11.67%	4828.2	11.53%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-8.328e-01	1.0000	167.0	6.11%	2520.2	6.02%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-8.069e-01	1.0000	2025.0	74.07%	30964.2	73.93%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-7.816e-01	1.0000	292.0	10.68%	4440.7	10.60%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-7.786e-01	1.0000	691.0	25.27%	10542.7	25.17%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-7.734e-01	1.0000	1774.0	64.89%	27130.7	64.77%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-7.720e-01	1.0000	12.0	0.44%	173.2	0.41%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-7.326e-01	1.0000	442.0	16.17%	6750.7	16.12%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-7.211e-01	1.0000	438.0	16.02%	6693.0	15.98%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-7.178e-01	1.0000	166.0	6.07%	2531.6	6.04%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-6.991e-01	1.0000	126.0	4.61%	1923.2	4.59%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-6.940e-01	1.0000	31.0	1.13%	469.0	1.12%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-6.894e-01	1.0000	107.0	3.91%	1635.0	3.90%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-6.838e-01	1.0000	125.0	4.57%	1911.2	4.56%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-6.509e-01	1.0000	144.0	5.27%	2210.9	5.28%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-6.448e-01	1.0000	572.0	20.92%	8777.5	20.96%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-6.433e-01	1.0000	546.0	19.97%	8379.9	20.01%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-6.364e-01	1.0000	522.0	19.09%	8014.6	19.13%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-6.266e-01	1.0000	185.0	6.77%	2846.2	6.80%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-6.101e-01	1.0000	354.0	12.95%	5447.3	13.01%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-5.969e-01	1.0000	296.0	10.83%	4561.2	10.89%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-5.934e-01	1.0000	1068.0	39.06%	16408.0	39.17%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-5.912e-01	1.0000	1293.0	47.29%	19856.8	47.41%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-5.848e-01	1.0000	730.0	26.70%	11230.0	26.81%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-5.825e-01	1.0000	396.0	14.48%	6103.6	14.57%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-5.579e-01	1.0000	55.0	2.01%	858.6	2.05%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-5.525e-01	1.0000	141.0	5.16%	2189.1	5.23%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-4.900e-01	1.0000	348.0	12.73%	5404.1	12.90%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-4.825e-01	1.0000	352.0	12.87%	5469.2	13.06%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-4.808e-01	1.0000	2140.0	78.27%	32877.7	78.50%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-4.768e-01	1.0000	570.0	20.85%	8829.7	21.08%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-4.676e-01	1.0000	13.0	0.48%	212.8	0.51%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-4.628e-01	1.0000	270.0	9.88%	4212.9	10.06%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-4.540e-01	1.0000	123.0	4.50%	1938.9	4.63%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-4.532e-01	1.0000	76.0	2.78%	1206.2	2.88%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-4.425e-01	1.0000	1094.0	40.01%	16900.7	40.35%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-4.389e-01	1.0000	653.0	23.88%	10128.0	24.18%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-4.300e-01	1.0000	454.0	16.61%	7068.8	16.88%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-4.173e-01	1.0000	685.0	25.05%	10634.5	25.39%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-4.139e-01	1.0000	145.0	5.30%	2293.8	5.48%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-4.081e-01	1.0000	685.0	25.05%	10641.0	25.41%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-4.063e-01	1.0000	342.0	12.51%	5351.7	12.78%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-3.832e-01	1.0000	498.0	18.22%	7774.9	18.56%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-3.702e-01	1.0000	122.0	4.46%	1949.1	4.65%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-3.644e-01	1.0000	750.0	27.43%	11671.9	27.87%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-3.617e-01	1.0000	100.0	3.66%	1607.4	3.84%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-3.604e-01	1.0000	129.0	4.72%	2062.0	4.92%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-3.197e-01	1.0000	413.0	15.11%	6500.3	15.52%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-3.063e-01	1.0000	468.0	17.12%	7361.8	17.58%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-2.912e-01	1.0000	59.0	2.16%	980.3	2.34%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-2.895e-01	1.0000	1001.0	36.61%	15595.7	37.23%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-2.886e-01	1.0000	894.0	32.70%	13950.6	33.31%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-2.819e-01	1.0000	638.0	23.34%	10009.2	23.90%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-2.803e-01	1.0000	151.0	5.52%	2440.9	5.83%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-2.752e-01	1.0000	145.0	5.30%	2348.9	5.61%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-2.607e-01	1.0000	473.0	17.30%	7473.6	17.84%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-2.530e-01	1.0000	518.0	18.95%	8177.2	19.52%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-2.476e-01	1.0000	462.0	16.90%	7313.5	17.46%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-2.470e-01	1.0000	369.0	13.50%	5868.6	14.01%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-2.443e-01	1.0000	698.0	25.53%	10970.4	26.19%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-2.413e-01	1.0000	216.0	7.90%	3482.1	8.31%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-2.312e-01	1.0000	353.0	12.91%	5631.1	13.44%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-2.129e-01	1.0000	285.0	10.42%	4583.7	10.94%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-2.063e-01	1.0000	97.0	3.55%	1620.6	3.87%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-2.042e-01	1.0000	229.0	8.38%	3711.2	8.86%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-2.016e-01	1.0000	21.0	0.77%	385.3	0.92%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.938e-01	1.0000	44.0	1.61%	769.2	1.84%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.935e-01	1.0000	247.0	9.03%	4002.3	9.56%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.877e-01	1.0000	488.0	17.85%	7773.4	18.56%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.738e-01	1.0000	222.0	8.12%	3624.7	8.65%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.729e-01	1.0000	1222.0	44.70%	19124.2	45.66%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.712e-01	1.0000	166.0	6.07%	2740.3	6.54%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.708e-01	1.0000	1439.0	52.63%	22452.5	53.61%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.677e-01	1.0000	137.0	5.01%	2281.6	5.45%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.662e-01	1.0000	33.0	1.21%	597.8	1.43%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.649e-01	1.0000	254.0	9.29%	4136.1	9.88%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.627e-01	1.0000	262.0	9.58%	4264.1	10.18%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.577e-01	1.0000	209.0	7.64%	3432.5	8.20%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.551e-01	1.0000	17.0	0.62%	329.0	0.79%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.540e-01	1.0000	1132.0	41.40%	17770.4	42.43%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.525e-01	1.0000	2088.0	76.37%	32352.0	77.24%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-1.511e-01	1.0000	44.0	1.61%	786.3	1.88%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.505e-01	1.0000	1014.0	37.09%	15960.2	38.11%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.412e-01	1.0000	113.0	4.13%	1915.1	4.57%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.411e-01	1.0000	155.0	5.67%	2588.4	6.18%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.399e-01	1.0000	643.0	23.52%	10241.7	24.45%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.351e-01	1.0000	635.0	23.23%	10124.4	24.17%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.234e-01	1.0000	411.0	15.03%	6648.5	15.87%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.181e-01	1.0000	147.0	5.38%	2480.7	5.92%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.160e-01	1.0000	481.0	17.59%	7754.6	18.51%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.098e-01	1.0000	1145.0	41.88%	18049.0	43.09%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.079e-01	1.0000	116.0	4.24%	1990.6	4.75%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.009e-01	1.0000	19.0	0.69%	383.4	0.92%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.005e-01	1.0000	34.0	1.24%	643.1	1.54%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-9.731e-02	1.0000	51.0	1.87%	932.9	2.23%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-9.208e-02	1.0000	532.0	19.46%	8592.7	20.52%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-8.864e-02	1.0000	350.0	12.80%	5742.7	13.71%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-8.541e-02	1.0000	61.0	2.23%	1108.6	2.65%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-8.139e-02	1.0000	7.0	0.26%	170.6	0.41%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-7.694e-02	1.0000	402.0	14.70%	6583.5	15.72%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-7.693e-02	1.0000	946.0	34.60%	15057.7	35.95%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-7.515e-02	1.0000	1194.0	43.67%	18883.5	45.08%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-6.350e-02	1.0000	1301.0	47.59%	20560.8	49.09%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-5.910e-02	1.0000	198.0	7.24%	3376.7	8.06%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-5.690e-02	1.0000	1056.0	38.62%	16815.5	40.15%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-5.680e-02	1.0000	1894.0	69.28%	29610.5	70.70%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-5.667e-02	1.0000	100.0	3.66%	1786.8	4.27%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-5.572e-02	1.0000	701.0	25.64%	11318.3	27.02%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-5.367e-02	1.0000	945.0	34.56%	15112.1	36.08%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-4.729e-02	1.0000	1166.0	42.65%	18545.7	44.28%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-4.698e-02	1.0000	149.0	5.45%	2606.7	6.22%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-4.403e-02	1.0000	776.0	28.38%	12527.1	29.91%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-4.383e-02	1.0000	580.0	21.21%	9468.1	22.61%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-4.338e-02	1.0000	1252.0	45.79%	19883.1	47.47%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-4.310e-02	1.0000	494.0	18.07%	8120.9	19.39%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-3.816e-02	1.0000	420.0	15.36%	6970.5	16.64%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-3.709e-02	1.0000	303.0	11.08%	5114.8	12.21%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-3.688e-02	1.0000	809.0	29.59%	13071.1	31.21%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-3.667e-02	1.0000	464.0	16.97%	7671.5	18.32%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-3.548e-02	1.0000	111.0	4.06%	2006.8	4.79%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-3.112e-02	1.0000	11.0	0.40%	278.4	0.66%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-3.097e-02	1.0000	1091.0	39.90%	17468.7	41.71%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-3.031e-02	1.0000	546.0	19.97%	8991.3	21.47%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-2.924e-02	1.0000	91.0	3.33%	1687.9	4.03%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-2.618e-02	1.0000	274.0	10.02%	4690.4	11.20%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-2.426e-02	1.0000	1436.0	52.52%	22806.5	54.45%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-2.425e-02	1.0000	1234.0	45.14%	19712.1	47.06%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-2.415e-02	1.0000	257.0	9.40%	4425.4	10.57%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-2.149e-02	1.0000	97.0	3.55%	1810.6	4.32%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-2.141e-02	1.0000	405.0	14.81%	6809.5	16.26%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-2.054e-02	1.0000	90.0	3.29%	1695.7	4.05%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-2.026e-02	1.0000	1295.0	47.37%	20679.4	49.37%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.951e-02	1.0000	131.0	4.79%	2386.5	5.70%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.921e-02	1.0000	535.0	19.57%	8883.9	21.21%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.717e-02	1.0000	888.0	32.48%	14425.1	34.44%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.639e-02	1.0000	529.0	19.35%	8810.8	21.04%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-1.619e-02	1.0000	326.0	11.92%	5580.1	13.32%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.531e-02	1.0000	2186.0	79.96%	34181.8	81.61%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.527e-02	1.0000	209.0	7.64%	3692.0	8.81%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.271e-02	1.0000	836.0	30.58%	13663.0	32.62%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.151e-02	1.0000	267.0	9.77%	4664.5	11.14%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.133e-02	1.0000	775.0	28.35%	12728.0	30.39%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.099e-02	1.0000	239.0	8.74%	4213.8	10.06%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-9.251e-03	1.0000	157.0	5.74%	2878.0	6.87%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-8.010e-03	1.0000	4.0	0.15%	161.7	0.39%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-5.858e-03	1.0000	272.0	9.95%	4811.2	11.49%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-5.190e-03	1.0000	27.0	0.99%	651.7	1.56%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-4.758e-03	1.0000	1608.0	58.81%	25674.0	61.30%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-4.170e-03	1.0000	116.0	4.24%	2244.6	5.36%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-4.167e-03	1.0000	383.0	14.01%	6644.4	15.86%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-4.004e-03	1.0000	1246.0	45.57%	20175.9	48.17%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-3.926e-03	1.0000	755.0	27.62%	12558.8	29.98%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-3.733e-03	1.0000	526.0	19.24%	8946.9	21.36%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.784e-03	1.0000	948.0	34.67%	15676.0	37.43%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.530e-03	1.0000	535.0	19.57%	9188.5	21.94%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.021e-03	1.0000	58.0	2.12%	1298.2	3.10%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-9.480e-04	1.0000	452.0	16.53%	7905.2	18.87%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-2.970e-04	1.0000	1137.0	41.59%	18819.4	44.93%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.980e-04	1.0000	63.0	2.30%	1462.7	3.49%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.930e-04	1.0000	1182.0	43.23%	19561.6	46.70%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.690e-04	1.0000	976.0	35.70%	16383.0	39.11%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-4.900e-05	1.0000	1099.0	40.20%	18422.4	43.98%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-9.000e-06	1.0000	1673.0	61.19%	27320.4	65.23%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-6.000e-06	1.0000	1221.0	44.66%	20506.1	48.96%