Information for 17-GGMAGYCTGC (Motif 12)


Reverse Opposite:

p-value:1e-146
log p-value:-3.372e+02
Information Content per bp:1.660
Number of Target Sequences with motif10132.0
Percentage of Target Sequences with motif29.35%
Number of Background Sequences with motif7879.2
Percentage of Background Sequences with motif23.31%
Average Position of motif in Targets297.3 +/- 160.9bp
Average Position of motif in Background298.7 +/- 176.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.23
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.72
Offset:2
Orientation:forward strand
Alignment:GGMAGYCTGC
--TWGTCTGV

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:forward strand
Alignment:GGMAGYCTGC
VBSYGTCTGG

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GGMAGYCTGC
--CTGTCTGG

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GGMAGYCTGC-
-TGAGTCAGCA

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.60
Offset:5
Orientation:forward strand
Alignment:GGMAGYCTGC-
-----GCTGTG

PB0042.1_Mafk_1/Jaspar

Match Rank:6
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GGMAGYCTGC-------
--AAGTCAGCANTTTTN

POL002.1_INR/Jaspar

Match Rank:7
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GGMAGYCTGC
--NNNANTGA

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GGMAGYCTGC---
TGGCAGNCTGCCAG

MA0117.1_Mafb/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GGMAGYCTGC
--NCGTCAGC

PB0060.1_Smad3_1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GGMAGYCTGC-----
NNTNNTGTCTGGNNTNG