Information for 20-AAGCCTAACG (Motif 18)


Reverse Opposite:

p-value:1e-120
log p-value:-2.769e+02
Information Content per bp:1.531
Number of Target Sequences with motif13302.0
Percentage of Target Sequences with motif38.53%
Number of Background Sequences with motif11002.3
Percentage of Background Sequences with motif32.55%
Average Position of motif in Targets297.0 +/- 169.0bp
Average Position of motif in Background293.2 +/- 181.7bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.24
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AAGCCTAACG
AGGCCTNG--

MA0164.1_Nr2e3/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AAGCCTAACG
CAAGCTT----

POL001.1_MTE/Jaspar

Match Rank:3
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----AAGCCTAACG-----
TTTCGAGCGGAACGGTCGC

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AAGCCTAACG
AGGCCTAG--

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AAGCCTAACG
CAGCC-----

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:AAGCCTAACG----
--GCCTCAGGGCAT

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:7
Score:0.52
Offset:2
Orientation:forward strand
Alignment:AAGCCTAACG----
--SCCTSAGGSCAW

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-AAGCCTAACG
BCAGACWA---

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:9
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-AAGCCTAACG----
ATTGCCTGAGGCAAT

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-AAGCCTAACG
TAATCCCN---