Information for 19-CTGGCTGCTTTA (Motif 23)


Reverse Opposite:

p-value:1e-74
log p-value:-1.710e+02
Information Content per bp:1.630
Number of Target Sequences with motif132.0
Percentage of Target Sequences with motif0.38%
Number of Background Sequences with motif15.5
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets279.6 +/- 87.7bp
Average Position of motif in Background287.8 +/- 132.3bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CTGGCTGCTTTA
TWGTCTGV----

MA0161.1_NFIC/Jaspar

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CTGGCTGCTTTA
TTGGCA------

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:3
Score:0.59
Offset:-7
Orientation:forward strand
Alignment:-------CTGGCTGCTTTA
GTCATGCHTGRCTGS----

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CTGGCTGCTTTA
--NGCTN-----

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTGGCTGCTTTA
CTGTCTGG----

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CTGGCTGCTTTA
GGTCTGGCAT-----

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CTGGCTGCTTTA
TGATTGGCTANN---

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CTGGCTGCTTTA
VBSYGTCTGG----

YY1(Zf)/Promoter/Homer

Match Rank:9
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CTGGCTGCTTTA
CAAGATGGCGGC----

MA0095.2_YY1/Jaspar

Match Rank:10
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CTGGCTGCTTTA
CAAGATGGCGGC----