Information for 24-GGCTTGAGTA (Motif 24)


Reverse Opposite:

p-value:1e-45
log p-value:-1.046e+02
Information Content per bp:1.975
Number of Target Sequences with motif148.0
Percentage of Target Sequences with motif0.43%
Number of Background Sequences with motif34.4
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets291.6 +/- 83.5bp
Average Position of motif in Background276.4 +/- 168.3bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:1
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GGCTTGAGTA---
--CTTGAGTGGCT

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:2
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GGCTTGAGTA--
--CTYRAGTGSY

MA0032.1_FOXC1/Jaspar

Match Rank:3
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GGCTTGAGTA
--GGTAAGTA

MA0124.1_NKX3-1/Jaspar

Match Rank:4
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GGCTTGAGTA-
----TAAGTAT

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:5
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GGCTTGAGTA---
---TTAAGTGCTT

MA0122.1_Nkx3-2/Jaspar

Match Rank:6
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GGCTTGAGTA--
---TTAAGTGGA

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:GGCTTGAGTA---
---TTGAGTGSTT

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GGCTTGAGTA
NGCTN-----

MA0099.2_JUN::FOS/Jaspar

Match Rank:9
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GGCTTGAGTA-
----TGAGTCA

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GGCTTGAGTA
ATGGGGTGAT--