Information for 2-HTGTGGTTTNNN (Motif 3)


Reverse Opposite:

p-value:1e-1136
log p-value:-2.616e+03
Information Content per bp:1.594
Number of Target Sequences with motif8478.0
Percentage of Target Sequences with motif24.56%
Number of Background Sequences with motif3643.4
Percentage of Background Sequences with motif10.78%
Average Position of motif in Targets300.6 +/- 123.2bp
Average Position of motif in Background297.1 +/- 175.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:1
Score:0.98
Offset:-1
Orientation:reverse strand
Alignment:-HTGTGGTTTNNN
NNTGTGGTTT---

MA0002.2_RUNX1/Jaspar

Match Rank:2
Score:0.96
Offset:-2
Orientation:forward strand
Alignment:--HTGTGGTTTNNN
GTCTGTGGTTT---

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:HTGTGGTTTNNN
CTGTGGTTTN--

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:4
Score:0.94
Offset:-2
Orientation:reverse strand
Alignment:--HTGTGGTTTNNN
NNHTGTGGTTWN--

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:5
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-HTGTGGTTTNNN
GCTGTGGTTT---

MA0511.1_RUNX2/Jaspar

Match Rank:6
Score:0.92
Offset:-5
Orientation:forward strand
Alignment:-----HTGTGGTTTNNN
GGGGTTTGTGGTTTG--

MA0479.1_FOXH1/Jaspar

Match Rank:7
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:HTGTGGTTTNNN
-TGTGGATTNNN

MA0130.1_ZNF354C/Jaspar

Match Rank:8
Score:0.75
Offset:2
Orientation:reverse strand
Alignment:HTGTGGTTTNNN
--GTGGAT----

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-HTGTGGTTTNNN
NNTGTGGATTSS-

MA0483.1_Gfi1b/Jaspar

Match Rank:10
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--HTGTGGTTTNNN
TGCTGTGATTT---