Information for 6-RCTGCCGTTT (Motif 4)


Reverse Opposite:

p-value:1e-420
log p-value:-9.684e+02
Information Content per bp:1.585
Number of Target Sequences with motif17495.0
Percentage of Target Sequences with motif50.67%
Number of Background Sequences with motif13180.6
Percentage of Background Sequences with motif39.00%
Average Position of motif in Targets298.5 +/- 163.9bp
Average Position of motif in Background295.3 +/- 184.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.30
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:RCTGCCGTTT-
-BRRCVGTTDN

PB0146.1_Mafk_2/Jaspar

Match Rank:2
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-RCTGCCGTTT----
CCTTGCAATTTTTNN

MA0095.2_YY1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:RCTGCCGTTT--
GCNGCCATCTTG

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:RCTGCCGTTT-
-CTGTGGTTTN

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:5
Score:0.62
Offset:2
Orientation:forward strand
Alignment:RCTGCCGTTT
--GGCVGTTR

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:RCTGCCGTTT
NNTGTGGTTT

YY1(Zf)/Promoter/Homer

Match Rank:7
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:RCTGCCGTTT--
GCCGCCATCTTG

MA0480.1_Foxo1/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:RCTGCCGTTT---
--TCCTGTTTACA

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:RCTGCCGTTT-
-CTGACCTTTG

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:10
Score:0.58
Offset:2
Orientation:forward strand
Alignment:RCTGCCGTTT----
--TGACCTTTNCNT