Information for 7-RGCYCCGCCC (Motif 5)


Reverse Opposite:

p-value:1e-356
log p-value:-8.198e+02
Information Content per bp:1.638
Number of Target Sequences with motif8182.0
Percentage of Target Sequences with motif23.70%
Number of Background Sequences with motif5192.6
Percentage of Background Sequences with motif15.36%
Average Position of motif in Targets298.3 +/- 123.7bp
Average Position of motif in Background269.0 +/- 162.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.83
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL003.1_GC-box/Jaspar

Match Rank:1
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-RGCYCCGCCC---
NAGCCCCGCCCCCN

MA0599.1_KLF5/Jaspar

Match Rank:2
Score:0.89
Offset:1
Orientation:forward strand
Alignment:RGCYCCGCCC-
-GCCCCGCCCC

MA0039.2_Klf4/Jaspar

Match Rank:3
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:RGCYCCGCCC-
-GCCCCACCCA

KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer

Match Rank:4
Score:0.88
Offset:1
Orientation:reverse strand
Alignment:RGCYCCGCCC-
-GCCMCRCCCH

PB0039.1_Klf7_1/Jaspar

Match Rank:5
Score:0.86
Offset:-2
Orientation:forward strand
Alignment:--RGCYCCGCCC----
TCGACCCCGCCCCTAT

Sp1(Zf)/Promoter/Homer

Match Rank:6
Score:0.85
Offset:0
Orientation:forward strand
Alignment:RGCYCCGCCC--
GGCCCCGCCCCC

MA0079.3_SP1/Jaspar

Match Rank:7
Score:0.85
Offset:1
Orientation:forward strand
Alignment:RGCYCCGCCC--
-GCCCCGCCCCC

MA0493.1_Klf1/Jaspar

Match Rank:8
Score:0.83
Offset:0
Orientation:forward strand
Alignment:RGCYCCGCCC-
GGCCACACCCA

MA0516.1_SP2/Jaspar

Match Rank:9
Score:0.82
Offset:1
Orientation:forward strand
Alignment:RGCYCCGCCC------
-GCCCCGCCCCCTCCC

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:10
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:RGCYCCGCCC--
GGCCACACCCAN