Information for 9-GCCGTAAC (Motif 7)


Reverse Opposite:

p-value:1e-260
log p-value:-5.991e+02
Information Content per bp:1.562
Number of Target Sequences with motif17677.0
Percentage of Target Sequences with motif51.20%
Number of Background Sequences with motif14186.2
Percentage of Background Sequences with motif41.98%
Average Position of motif in Targets296.9 +/- 166.1bp
Average Position of motif in Background294.9 +/- 187.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.32
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0158.1_Rhox11_2/Jaspar

Match Rank:1
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----GCCGTAAC----
AGGACGCTGTAAAGGGA

PH0157.1_Rhox11_1/Jaspar

Match Rank:2
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----GCCGTAAC----
AAGACGCTGTAAAGCGA

PH0077.1_Hoxd12/Jaspar

Match Rank:3
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GCCGTAAC-----
CAAGGTCGTAAAATCTT

MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GCCGTAAC
GGCVGTTR-

PH0065.1_Hoxc10/Jaspar

Match Rank:5
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GCCGTAAC----
TAAAGTCGTAAAACGT

PH0067.1_Hoxc12/Jaspar

Match Rank:6
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GCCGTAAC-----
TTAGGTCGTAAAATTTC

PH0076.1_Hoxd11/Jaspar

Match Rank:7
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GCCGTAAC-----
TAAGGTCGTAAAATCCT

PH0066.1_Hoxc11/Jaspar

Match Rank:8
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GCCGTAAC----
TAAAGTCGTAAAATAG

PH0047.1_Hoxa11/Jaspar

Match Rank:9
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GCCGTAAC----
TAAAGTCGTAAAACAT

PB0159.1_Rfx4_2/Jaspar

Match Rank:10
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCCGTAAC-------
NNNGTAACTANGNNA