Information for 12-GGCGCTTTAA (Motif 8)


Reverse Opposite:

p-value:1e-255
log p-value:-5.879e+02
Information Content per bp:1.450
Number of Target Sequences with motif20405.0
Percentage of Target Sequences with motif59.10%
Number of Background Sequences with motif16876.2
Percentage of Background Sequences with motif49.94%
Average Position of motif in Targets296.8 +/- 167.1bp
Average Position of motif in Background294.2 +/- 186.9bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.45
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0158.1_Rhox11_2/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GGCGCTTTAA-----
AGGACGCTGTAAAGGGA

PH0157.1_Rhox11_1/Jaspar

Match Rank:2
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GGCGCTTTAA-----
AAGACGCTGTAAAGCGA

PB0184.1_Tbp_2/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGCGCTTTAA----
GNNCGCTTAAATCGG

MA0151.1_ARID3A/Jaspar

Match Rank:4
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:GGCGCTTTAA-
-----TTTAAT

PB0179.1_Sp100_2/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GGCGCTTTAA--
TCCGTCGCTTAAAAG

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GGCGCTTTAA---
---CCTTTGATGT

PB0008.1_E2F2_1/Jaspar

Match Rank:7
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GGCGCTTTAA-
NTCGCGCGCCTTNNN

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GGCGCTTTAA
--NGCTN---

POL006.1_BREu/Jaspar

Match Rank:9
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGCGCTTTAA
GGCGCGCT--

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:10
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:GGCGCTTTAA-----
-----TTTAATTGCN