Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 34525)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 33761)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-2858	-6.582e+03	0.0000	6356.0	18.41%	1029.7	3.05%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-1648	-3.795e+03	0.0000	7773.0	22.51%	2542.2	7.52%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-1382	-3.184e+03	0.0000	16906.0	48.97%	9661.7	28.59%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-1196	-2.754e+03	0.0000	19652.0	56.92%	12577.2	37.21%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-1182	-2.722e+03	0.0000	15142.0	43.86%	8629.5	25.53%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-1126	-2.593e+03	0.0000	18141.0	52.55%	11379.0	33.67%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-1004	-2.313e+03	0.0000	13572.0	39.31%	7751.3	22.94%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-996	-2.294e+03	0.0000	13112.0	37.98%	7395.7	21.88%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-994	-2.290e+03	0.0000	9644.0	27.93%	4715.0	13.95%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-932	-2.148e+03	0.0000	9973.0	28.89%	5082.0	15.04%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-864	-1.990e+03	0.0000	10858.0	31.45%	5910.0	17.49%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-836	-1.927e+03	0.0000	9980.0	28.91%	5294.1	15.66%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-698	-1.607e+03	0.0000	9868.0	28.58%	5538.1	16.39%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-679	-1.564e+03	0.0000	9835.0	28.49%	5560.1	16.45%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-677	-1.561e+03	0.0000	9810.0	28.42%	5544.7	16.41%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-655	-1.510e+03	0.0000	5092.0	14.75%	2160.6	6.39%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-639	-1.473e+03	0.0000	15392.0	44.58%	10371.1	30.69%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-563	-1.297e+03	0.0000	6319.0	18.30%	3178.2	9.40%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-555	-1.280e+03	0.0000	8996.0	26.06%	5227.4	15.47%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-418	-9.635e+02	0.0000	11922.0	34.53%	8123.5	24.04%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-403	-9.292e+02	0.0000	2344.0	6.79%	828.4	2.45%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-372	-8.583e+02	0.0000	9156.0	26.52%	5938.4	17.57%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-362	-8.338e+02	0.0000	6614.0	19.16%	3913.6	11.58%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-249	-5.755e+02	0.0000	13710.0	39.71%	10513.3	31.11%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-246	-5.665e+02	0.0000	7463.0	21.62%	5017.6	14.85%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-229	-5.295e+02	0.0000	15582.0	45.13%	12375.9	36.62%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-224	-5.165e+02	0.0000	11146.0	32.28%	8325.4	24.63%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-217	-5.017e+02	0.0000	13743.0	39.81%	10730.5	31.75%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-182	-4.197e+02	0.0000	16486.0	47.75%	13547.4	40.09%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-182	-4.192e+02	0.0000	16336.0	47.32%	13405.3	39.67%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-176	-4.071e+02	0.0000	1562.0	4.52%	685.9	2.03%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-173	-3.998e+02	0.0000	4867.0	14.10%	3173.4	9.39%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-173	-3.987e+02	0.0000	5885.0	17.05%	4015.4	11.88%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-171	-3.958e+02	0.0000	28710.0	83.16%	26038.5	77.05%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-165	-3.805e+02	0.0000	12176.0	35.27%	9619.4	28.46%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-164	-3.781e+02	0.0000	6431.0	18.63%	4518.7	13.37%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-162	-3.748e+02	0.0000	8912.0	25.81%	6683.9	19.78%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-156	-3.613e+02	0.0000	2857.0	8.28%	1650.7	4.88%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-147	-3.393e+02	0.0000	9115.0	26.40%	6958.1	20.59%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-146	-3.378e+02	0.0000	7569.0	21.92%	5594.8	16.55%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-145	-3.339e+02	0.0000	8561.0	24.80%	6479.9	19.17%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-144	-3.316e+02	0.0000	10970.0	31.77%	8658.4	25.62%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-138	-3.194e+02	0.0000	3237.0	9.38%	2004.7	5.93%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-135	-3.115e+02	0.0000	10980.0	31.80%	8729.5	25.83%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-125	-2.887e+02	0.0000	7815.0	22.64%	5942.0	17.58%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-124	-2.876e+02	0.0000	13319.0	38.58%	10980.4	32.49%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-121	-2.808e+02	0.0000	1638.0	4.74%	852.5	2.52%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-121	-2.791e+02	0.0000	3083.0	8.93%	1948.8	5.77%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-114	-2.641e+02	0.0000	3141.0	9.10%	2020.8	5.98%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-114	-2.637e+02	0.0000	4780.0	13.85%	3372.9	9.98%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-112	-2.597e+02	0.0000	1166.0	3.38%	547.3	1.62%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-110	-2.542e+02	0.0000	743.0	2.15%	283.5	0.84%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-107	-2.487e+02	0.0000	2358.0	6.83%	1429.6	4.23%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-107	-2.482e+02	0.0000	5565.0	16.12%	4080.5	12.07%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-102	-2.352e+02	0.0000	6131.0	17.76%	4607.1	13.63%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-101	-2.328e+02	0.0000	5396.0	15.63%	3974.0	11.76%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-99	-2.297e+02	0.0000	1300.0	3.77%	668.0	1.98%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-98	-2.269e+02	0.0000	2950.0	8.54%	1934.4	5.72%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-91	-2.106e+02	0.0000	787.0	2.28%	340.6	1.01%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-89	-2.067e+02	0.0000	1413.0	4.09%	775.3	2.29%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-88	-2.042e+02	0.0000	1380.0	4.00%	754.3	2.23%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-86	-1.984e+02	0.0000	674.0	1.95%	278.6	0.82%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-84	-1.948e+02	0.0000	1975.0	5.72%	1217.0	3.60%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-84	-1.937e+02	0.0000	12423.0	35.98%	10499.7	31.07%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-83	-1.916e+02	0.0000	1940.0	5.62%	1194.2	3.53%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-82	-1.911e+02	0.0000	999.0	2.89%	498.4	1.47%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-80	-1.864e+02	0.0000	1207.0	3.50%	650.8	1.93%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-79	-1.841e+02	0.0000	15413.0	44.64%	13388.6	39.62%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-75	-1.749e+02	0.0000	15796.0	45.75%	13801.0	40.84%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-74	-1.707e+02	0.0000	16646.0	48.22%	14642.8	43.33%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-73	-1.696e+02	0.0000	1265.0	3.66%	713.8	2.11%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-70	-1.630e+02	0.0000	1030.0	2.98%	550.4	1.63%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-64	-1.488e+02	0.0000	6616.0	19.16%	5317.5	15.73%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-64	-1.481e+02	0.0000	22882.0	66.28%	20910.7	61.87%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-63	-1.467e+02	0.0000	15429.0	44.69%	13587.1	40.20%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-62	-1.439e+02	0.0000	4531.0	13.12%	3475.6	10.28%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-59	-1.362e+02	0.0000	2653.0	7.68%	1881.1	5.57%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-58	-1.353e+02	0.0000	6827.0	19.77%	5561.5	16.46%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-58	-1.350e+02	0.0000	9311.0	26.97%	7848.2	23.22%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-57	-1.330e+02	0.0000	5124.0	14.84%	4036.2	11.94%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e-57	-1.327e+02	0.0000	4416.0	12.79%	3411.0	10.09%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-54	-1.264e+02	0.0000	968.0	2.80%	550.8	1.63%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-52	-1.200e+02	0.0000	6548.0	18.97%	5370.8	15.89%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-51	-1.186e+02	0.0000	20788.0	60.21%	18986.3	56.18%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-47	-1.096e+02	0.0000	6825.0	19.77%	5669.3	16.77%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-44	-1.025e+02	0.0000	2150.0	6.23%	1542.2	4.56%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-44	-1.025e+02	0.0000	12586.0	36.46%	11109.0	32.87%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-43	-1.008e+02	0.0000	8257.0	23.92%	7035.1	20.82%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-41	-9.561e+01	0.0000	250.0	0.72%	90.3	0.27%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-39	-9.198e+01	0.0000	1184.0	3.43%	771.5	2.28%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-37	-8.547e+01	0.0000	7982.0	23.12%	6861.8	20.30%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-36	-8.479e+01	0.0000	7670.0	22.22%	6574.2	19.45%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-36	-8.359e+01	0.0000	13097.0	37.94%	11717.9	34.67%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-36	-8.304e+01	0.0000	4196.0	12.15%	3397.3	10.05%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-35	-8.121e+01	0.0000	4489.0	13.00%	3669.7	10.86%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-34	-7.837e+01	0.0000	3194.0	9.25%	2521.5	7.46%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-33	-7.812e+01	0.0000	2125.0	6.16%	1588.6	4.70%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-33	-7.641e+01	0.0000	4356.0	12.62%	3570.3	10.56%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-32	-7.452e+01	0.0000	1148.0	3.33%	777.6	2.30%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-31	-7.357e+01	0.0000	6491.0	18.80%	5541.3	16.40%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-30	-6.974e+01	0.0000	14103.0	40.85%	12784.8	37.83%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-29	-6.848e+01	0.0000	4979.0	14.42%	4175.6	12.36%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-29	-6.791e+01	0.0000	6215.0	18.00%	5317.3	15.73%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-29	-6.777e+01	0.0000	6405.0	18.55%	5494.4	16.26%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-28	-6.637e+01	0.0000	799.0	2.31%	513.6	1.52%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-28	-6.527e+01	0.0000	16130.0	46.72%	14783.2	43.74%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-27	-6.430e+01	0.0000	2085.0	6.04%	1597.7	4.73%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-27	-6.366e+01	0.0000	5016.0	14.53%	4234.9	12.53%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-27	-6.221e+01	0.0000	3249.0	9.41%	2635.4	7.80%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-25	-5.870e+01	0.0000	12483.0	36.16%	11310.4	33.47%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-25	-5.777e+01	0.0000	13692.0	39.66%	12482.8	36.94%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-24	-5.740e+01	0.0000	5697.0	16.50%	4898.2	14.49%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-24	-5.737e+01	0.0000	10569.0	30.61%	9488.4	28.08%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-23	-5.449e+01	0.0000	306.0	0.89%	158.5	0.47%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-23	-5.446e+01	0.0000	5350.0	15.50%	4594.5	13.59%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-23	-5.439e+01	0.0000	25098.0	72.70%	23734.8	70.23%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-21	-5.062e+01	0.0000	753.0	2.18%	507.0	1.50%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-21	-5.002e+01	0.0000	1853.0	5.37%	1444.2	4.27%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e-21	-4.935e+01	0.0000	17274.0	50.03%	16036.4	47.45%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-20	-4.815e+01	0.0000	5758.0	16.68%	5013.2	14.83%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-20	-4.609e+01	0.0000	12023.0	34.83%	10975.9	32.48%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-19	-4.605e+01	0.0000	13248.0	38.37%	12156.1	35.97%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-19	-4.560e+01	0.0000	10957.0	31.74%	9956.2	29.46%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-19	-4.482e+01	0.0000	6929.0	20.07%	6134.7	18.15%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-19	-4.440e+01	0.0000	3757.0	10.88%	3184.3	9.42%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-18	-4.365e+01	0.0000	7600.0	22.01%	6776.3	20.05%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-17	-4.137e+01	0.0000	2653.0	7.68%	2195.0	6.49%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-17	-4.135e+01	0.0000	13007.0	37.68%	11968.9	35.41%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-17	-3.958e+01	0.0000	4531.0	13.12%	3928.9	11.63%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e-17	-3.924e+01	0.0000	144.0	0.42%	63.1	0.19%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-16	-3.751e+01	0.0000	4501.0	13.04%	3914.7	11.58%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-16	-3.716e+01	0.0000	1516.0	4.39%	1196.6	3.54%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-15	-3.606e+01	0.0000	791.0	2.29%	573.7	1.70%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e-15	-3.482e+01	0.0000	16302.0	47.22%	15235.5	45.08%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-14	-3.382e+01	0.0000	13458.0	38.98%	12482.2	36.93%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-14	-3.368e+01	0.0000	16666.0	48.27%	15603.3	46.17%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-14	-3.308e+01	0.0000	11939.0	34.58%	11022.6	32.61%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-13	-3.215e+01	0.0000	771.0	2.23%	567.2	1.68%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-13	-3.164e+01	0.0000	5507.0	15.95%	4899.6	14.50%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e-13	-3.145e+01	0.0000	9924.0	28.75%	9101.4	26.93%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e-12	-2.901e+01	0.0000	24384.0	70.63%	23264.5	68.84%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-12	-2.880e+01	0.0000	3035.0	8.79%	2614.3	7.74%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-11	-2.647e+01	0.0000	2001.0	5.80%	1680.0	4.97%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e-10	-2.532e+01	0.0000	13304.0	38.54%	12433.5	36.79%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-10	-2.526e+01	0.0000	2925.0	8.47%	2536.5	7.51%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-9	-2.266e+01	0.0000	15450.0	44.75%	14555.7	43.07%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-9	-2.225e+01	0.0000	6812.0	19.73%	6224.1	18.42%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-9	-2.099e+01	0.0000	4763.0	13.80%	4293.0	12.70%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e-9	-2.085e+01	0.0000	7360.0	21.32%	6763.8	20.01%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-8	-2.048e+01	0.0000	1496.0	4.33%	1254.3	3.71%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e-8	-2.046e+01	0.0000	6150.0	17.81%	5613.2	16.61%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-8	-2.004e+01	0.0000	2353.0	6.82%	2044.0	6.05%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-8	-1.847e+01	0.0000	1747.0	5.06%	1495.8	4.43%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e-7	-1.842e+01	0.0000	3193.0	9.25%	2838.8	8.40%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e-7	-1.730e+01	0.0000	10764.0	31.18%	10084.6	29.84%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-7	-1.685e+01	0.0000	4751.0	13.76%	4323.6	12.79%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-6	-1.606e+01	0.0000	4413.0	12.78%	4011.1	11.87%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-6	-1.566e+01	0.0000	3986.0	11.55%	3611.1	10.69%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-6	-1.558e+01	0.0000	1260.0	3.65%	1067.1	3.16%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e-6	-1.477e+01	0.0000	3807.0	11.03%	3451.7	10.21%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-6	-1.414e+01	0.0000	624.0	1.81%	501.2	1.48%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-5	-1.370e+01	0.0000	3915.0	11.34%	3565.3	10.55%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-5	-1.207e+01	0.0000	1828.0	5.29%	1616.2	4.78%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-4	-1.135e+01	0.0000	3508.0	10.16%	3206.1	9.49%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-4	-1.112e+01	0.0000	2328.0	6.74%	2093.7	6.19%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e-4	-1.076e+01	0.0000	1188.0	3.44%	1033.0	3.06%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e-4	-1.075e+01	0.0000	2444.0	7.08%	2206.5	6.53%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-4	-1.049e+01	0.0000	707.0	2.05%	593.7	1.76%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e-4	-9.443e+00	0.0001	3379.0	9.79%	3107.5	9.19%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-4	-9.238e+00	0.0002	2965.0	8.59%	2716.2	8.04%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-3	-8.752e+00	0.0002	1292.0	3.74%	1144.6	3.39%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-3	-8.706e+00	0.0003	5210.0	15.09%	4869.1	14.41%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-3	-8.397e+00	0.0003	123.0	0.36%	86.1	0.25%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e-3	-8.169e+00	0.0004	1001.0	2.90%	878.8	2.60%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e-3	-7.664e+00	0.0007	2461.0	7.13%	2257.9	6.68%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-3	-7.332e+00	0.0010	495.0	1.43%	418.5	1.24%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-3	-7.220e+00	0.0011	6685.0	19.36%	6317.2	18.69%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-3	-6.977e+00	0.0014	1907.0	5.52%	1740.7	5.15%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-2	-6.843e+00	0.0016	135.0	0.39%	100.3	0.30%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-2	-6.706e+00	0.0018	25919.0	75.08%	25132.6	74.37%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-2	-6.198e+00	0.0030	3267.0	9.46%	3047.6	9.02%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-2	-6.157e+00	0.0031	7802.0	22.60%	7422.0	21.96%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-2	-5.562e+00	0.0055	2090.0	6.05%	1932.5	5.72%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e-2	-5.373e+00	0.0067	2736.0	7.92%	2553.0	7.55%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-2	-5.347e+00	0.0068	2491.0	7.22%	2318.7	6.86%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-2	-5.068e+00	0.0089	1468.0	4.25%	1348.0	3.99%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-2	-4.941e+00	0.0101	1460.0	4.23%	1341.7	3.97%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-2	-4.626e+00	0.0138	1606.0	4.65%	1484.7	4.39%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-3.915e+00	0.0278	9724.0	28.17%	9351.6	27.67%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-1	-3.315e+00	0.0505	7371.0	21.35%	7082.3	20.96%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-1	-3.217e+00	0.0554	356.0	1.03%	317.2	0.94%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-2.921e+00	0.0741	2326.0	6.74%	2204.7	6.52%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1	-2.754e+00	0.0871	9214.0	26.69%	8897.7	26.33%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e-1	-2.605e+00	0.1005	4828.0	13.98%	4635.2	13.72%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-1	-2.547e+00	0.1060	906.0	2.62%	846.7	2.51%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.517e+00	0.2955	1192.0	3.45%	1141.0	3.38%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.384e+00	0.3340	605.0	1.75%	577.0	1.71%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.384e+00	0.3340	605.0	1.75%	577.0	1.71%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.379e+00	0.3342	8459.0	24.50%	8228.7	24.35%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.364e+00	0.3375	11851.0	34.33%	11544.2	34.16%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.327e+00	0.3483	888.0	2.57%	851.6	2.52%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.306e+00	0.3541	3439.0	9.96%	3333.9	9.86%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.192e+00	0.3948	3731.0	10.81%	3623.4	10.72%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.060e+00	0.4486	7851.0	22.74%	7655.3	22.65%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-9.258e-01	0.5103	2695.0	7.81%	2625.2	7.77%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-8.629e-01	0.5408	1108.0	3.21%	1078.2	3.19%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-8.590e-01	0.5408	9297.0	26.93%	9085.3	26.88%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-7.812e-01	0.5811	2135.0	6.18%	2085.3	6.17%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-7.604e-01	0.5905	1004.0	2.91%	980.5	2.90%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-7.033e-01	0.6222	213.0	0.62%	208.3	0.62%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-7.003e-01	0.6222	15020.0	43.51%	14702.6	43.50%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-6.657e-01	0.6399	1322.0	3.83%	1295.2	3.83%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-6.181e-01	0.6680	1533.0	4.44%	1504.1	4.45%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-5.623e-01	0.7030	7923.0	22.95%	7769.6	22.99%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-5.472e-01	0.7104	8495.0	24.61%	8331.5	24.65%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-5.189e-01	0.7274	2252.0	6.52%	2215.9	6.56%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-5.119e-01	0.7291	2701.0	7.82%	2656.1	7.86%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-4.104e-01	0.8034	3114.0	9.02%	3070.2	9.08%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-3.596e-01	0.8414	1719.0	4.98%	1704.0	5.04%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-3.320e-01	0.8610	5556.0	16.09%	5477.0	16.21%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-2.336e-01	0.9457	829.0	2.40%	834.6	2.47%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.324e-01	0.9457	514.0	1.49%	521.9	1.54%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.815e-01	0.9874	189.0	0.55%	198.8	0.59%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.023e-01	1.0000	9495.0	27.50%	9400.9	27.82%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-6.215e-02	1.0000	17672.0	51.19%	17440.5	51.60%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-5.748e-02	1.0000	1369.0	3.97%	1397.4	4.13%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-4.838e-02	1.0000	2720.0	7.88%	2745.1	8.12%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-3.895e-02	1.0000	1093.0	3.17%	1127.5	3.34%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-3.799e-02	1.0000	1638.0	4.74%	1674.0	4.95%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-2.962e-02	1.0000	592.0	1.71%	625.2	1.85%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-8.250e-04	1.0000	6287.0	18.21%	6377.8	18.87%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-3.800e-04	1.0000	1936.0	5.61%	2039.1	6.03%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-3.110e-04	1.0000	23699.0	68.65%	23486.9	69.50%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-4.900e-05	1.0000	3807.0	11.03%	3952.8	11.70%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.600e-05	1.0000	213.0	0.62%	273.0	0.81%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-0.000e+00	1.0000	627.0	1.82%	741.2	2.19%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-0.000e+00	1.0000	3557.0	10.30%	3766.9	11.15%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-0.000e+00	1.0000	3094.0	8.96%	3312.9	9.80%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-0.000e+00	1.0000	3239.0	9.38%	3460.9	10.24%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	171.0	0.50%	245.5	0.73%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-0.000e+00	1.0000	21249.0	61.55%	21385.3	63.28%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-0.000e+00	1.0000	5476.0	15.86%	5826.3	17.24%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-0.000e+00	1.0000	518.0	1.50%	676.7	2.00%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-0.000e+00	1.0000	18208.0	52.74%	18493.1	54.72%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-0.000e+00	1.0000	4345.0	12.59%	4722.6	13.97%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-0.000e+00	1.0000	17549.0	50.83%	17864.2	52.86%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-0.000e+00	1.0000	5957.0	17.25%	6391.3	18.91%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	17461.0	50.58%	18279.9	54.09%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	0.000e+00	1.0000	16521.0	47.85%	17520.8	51.84%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	0.000e+00	1.0000	4515.0	13.08%	5095.3	15.08%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	0.000e+00	1.0000	5840.0	16.92%	6759.5	20.00%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	0.000e+00	1.0000	10124.0	29.32%	12512.8	37.02%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	0.000e+00	1.0000	3350.0	9.70%	3852.4	11.40%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	0.000e+00	1.0000	4987.0	14.45%	5445.2	16.11%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	0.000e+00	1.0000	732.0	2.12%	1859.9	5.50%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	0.000e+00	1.0000	3853.0	11.16%	5816.9	17.21%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	0.000e+00	1.0000	4175.0	12.09%	6382.8	18.89%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	0.000e+00	1.0000	1048.0	3.04%	1487.3	4.40%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	0.000e+00	1.0000	1861.0	5.39%	2421.5	7.16%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	0.000e+00	1.0000	1356.0	3.93%	1950.4	5.77%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	0.000e+00	1.0000	3526.0	10.21%	4141.3	12.25%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	0.000e+00	1.0000	5977.0	17.31%	6444.3	19.07%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	0.000e+00	1.0000	4540.0	13.15%	5168.8	15.29%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	0.000e+00	1.0000	4019.0	11.64%	5633.7	16.67%