Information for 4-ACAGAGTTGAAC (Motif 4)


Reverse Opposite:

p-value:1e-45
log p-value:-1.049e+02
Information Content per bp:1.934
Number of Target Sequences with motif65.0
Percentage of Target Sequences with motif0.39%
Number of Background Sequences with motif11.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets162.0 +/- 86.5bp
Average Position of motif in Background194.9 +/- 70.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0512.1_Rxra/Jaspar

Match Rank:1
Score:0.57
Offset:1
Orientation:forward strand
Alignment:ACAGAGTTGAAC
-CAAAGGTCAGA

MA0133.1_BRCA1/Jaspar

Match Rank:2
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:ACAGAGTTGAAC
---GTGTTGN--

MA0442.1_SOX10/Jaspar

Match Rank:3
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:ACAGAGTTGAAC
ACAAAG------

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-ACAGAGTTGAAC
CACAGN-------

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.52
Offset:1
Orientation:forward strand
Alignment:ACAGAGTTGAAC-
-CGGAAGTGAAAC

MA0114.2_HNF4A/Jaspar

Match Rank:6
Score:0.50
Offset:-4
Orientation:reverse strand
Alignment:----ACAGAGTTGAAC
NAGNNCAAAGTCCAN-

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:7
Score:0.50
Offset:-6
Orientation:forward strand
Alignment:------ACAGAGTTGAAC
CANAGNNCAAAGTCCA--

MA0484.1_HNF4G/Jaspar

Match Rank:8
Score:0.49
Offset:-5
Orientation:forward strand
Alignment:-----ACAGAGTTGAAC
AGAGTCCAAAGTCCA--

PB0114.1_Egr1_2/Jaspar

Match Rank:9
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-ACAGAGTTGAAC---
TGCGGAGTGGGACTGG

MA0017.1_NR2F1/Jaspar

Match Rank:10
Score:0.49
Offset:-4
Orientation:reverse strand
Alignment:----ACAGAGTTGAAC
AGGTTCAAAGGTCA--