Information for 7-CGCTCCAAAT (Motif 10)


Reverse Opposite:

p-value:1e-17
log p-value:-4.084e+01
Information Content per bp:1.976
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets168.3 +/- 103.4bp
Average Position of motif in Background257.3 +/- 52.0bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CGCTCCAAAT
-GCTCCG---

PB0202.1_Zfp410_2/Jaspar

Match Rank:2
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------CGCTCCAAAT-
TCACCCCGCCCCAAATT

PB0110.1_Bcl6b_2/Jaspar

Match Rank:3
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CGCTCCAAAT-
ATCCCCGCCCCTAAAA

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CGCTCCAAAT--
--CCAAAAATAG

E2F(E2F)/Hela-CellCycle-Expression/Homer

Match Rank:5
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CGCTCCAAAT
TTCGCGCGAAAA

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CGCTCCAAAT
NGCTN-----

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CGCTCCAAAT
CGGTTTCAAA-

MA0161.1_NFIC/Jaspar

Match Rank:8
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CGCTCCAAAT
--TGCCAA--

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CGCTCCAAAT---
-DCYAAAAATAGM

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---CGCTCCAAAT
AASCACTCAA---