Information for 10-TCGCAGAWTC (Motif 12)


Reverse Opposite:

p-value:1e-15
log p-value:-3.532e+01
Information Content per bp:1.573
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif1.69%
Number of Background Sequences with motif103.7
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets171.3 +/- 92.9bp
Average Position of motif in Background167.2 +/- 114.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.36
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0519.1_Stat5a::Stat5b/Jaspar

Match Rank:1
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TCGCAGAWTC
ATTTCCAAGAA--

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:2
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TCGCAGAWTC
NTTTCTNAGAAA-

MA0144.2_STAT3/Jaspar

Match Rank:3
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--TCGCAGAWTC
TTTCCCAGAAN-

MA0137.3_STAT1/Jaspar

Match Rank:4
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--TCGCAGAWTC
TTTCCTGGAAA-

PB0159.1_Rfx4_2/Jaspar

Match Rank:5
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--TCGCAGAWTC---
TACCCTAGTTACCGA

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.53
Offset:-11
Orientation:forward strand
Alignment:-----------TCGCAGAWTC
TTTTTTTTTTTTTTCAGGTT-

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.53
Offset:-11
Orientation:forward strand
Alignment:-----------TCGCAGAWTC
TTTTTTTTTTTTTTCAGGTT-

PB0138.1_Irf4_2/Jaspar

Match Rank:8
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---TCGCAGAWTC--
GNNACCGAGAATNNN

PH0077.1_Hoxd12/Jaspar

Match Rank:9
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----TCGCAGAWTC--
CAAGGTCGTAAAATCTT

PB0006.1_Bcl6b_1/Jaspar

Match Rank:10
Score:0.51
Offset:-5
Orientation:reverse strand
Alignment:-----TCGCAGAWTC-
NNNATTCCTCGAAAGN