Information for 20-GCAGACTACT (Motif 29)


Reverse Opposite:

p-value:1e-2
log p-value:-5.088e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets210.0 +/- 88.2bp
Average Position of motif in Background159.6 +/- 90.2bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)4.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GCAGACTACT
BCAGACWA--

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GCAGACTACT
CCAGACRSVB

PB0203.1_Zfp691_2/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCAGACTACT-----
TACGAGACTCCTCTAAC

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCAGACTACT
CCAGACAG--

MA0027.1_En1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCAGACTACT-
GANCACTACTT

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCAGACTACT------
TTCNAAGTACTTNNNNN

PB0208.1_Zscan4_2/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GCAGACTACT--
CGAAGCACACAAAATA

MA0032.1_FOXC1/Jaspar

Match Rank:8
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:GCAGACTACT----
------TACTNNNN

PB0154.1_Osr1_2/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GCAGACTACT------
ACATGCTACCTAATAC

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GCAGACTACT
TGCTGACTCA-