Information for 3-TATCCACTTGCA (Motif 3)


Reverse Opposite:

p-value:1e-43
log p-value:-1.003e+02
Information Content per bp:1.909
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif1.80%
Number of Background Sequences with motif13.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets196.3 +/- 94.6bp
Average Position of motif in Background213.4 +/- 126.0bp
Strand Bias (log2 ratio + to - strand density)-2.5
Multiplicity (# of sites on avg that occur together)1.32
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0114.1_Nkx2-5/Jaspar

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TATCCACTTGCA---
TAAGCCACTTGAATTT

PH0111.1_Nkx2-2/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TATCCACTTGCA----
ATAACCACTTGAAAATT

PH0171.1_Nkx2-1/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TATCCACTTGCA---
TAAGCCACTTGAAATT

MA0130.1_ZNF354C/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TATCCACTTGCA
-ATCCAC-----

PH0115.1_Nkx2-6/Jaspar

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TATCCACTTGCA---
TAAGCCACTTAACATT

PB0111.1_Bhlhb2_2/Jaspar

Match Rank:6
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TATCCACTTGCA------
ACCGCCNTCCACGTGTANNGACA

PH0113.1_Nkx2-4/Jaspar

Match Rank:7
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TATCCACTTGCA---
TAAGCCACTTGAAATT

MA0122.1_Nkx3-2/Jaspar

Match Rank:8
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TATCCACTTGCA
--NCCACTTAN-

PH0004.1_Nkx3-2/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TATCCACTTGCA---
CATAACCACTTAACAAC

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:10
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:TATCCACTTGCA--
---NNACTTGCCTT