Information for 24-GTCTAGTCTAGT (Motif 32)


Reverse Opposite:

p-value:1e-1
log p-value:-3.765e+00
Information Content per bp:1.962
Number of Target Sequences with motif185.0
Percentage of Target Sequences with motif10.75%
Number of Background Sequences with motif4160.1
Percentage of Background Sequences with motif9.30%
Average Position of motif in Targets185.7 +/- 101.5bp
Average Position of motif in Background183.8 +/- 118.7bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.61
Offset:3
Orientation:forward strand
Alignment:GTCTAGTCTAGT
---TWGTCTGV-

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------GTCTAGTCTAGT
NNTNNTGTCTGGNNTNG-

PH0040.1_Hmbox1/Jaspar

Match Rank:3
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GTCTAGTCTAGT-------
--GAAAACTAGTTAACATC

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GTCTAGTCTAGT
CTGTCTGG------

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----GTCTAGTCTAGT
VBSYGTCTGG------

MA0106.2_TP53/Jaspar

Match Rank:6
Score:0.50
Offset:-3
Orientation:reverse strand
Alignment:---GTCTAGTCTAGT
CATGTCTGGGCATGT

MA0040.1_Foxq1/Jaspar

Match Rank:7
Score:0.49
Offset:1
Orientation:forward strand
Alignment:GTCTAGTCTAGT
-TATTGTTTATT

PB0185.1_Tcf1_2/Jaspar

Match Rank:8
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:GTCTAGTCTAGT---
-NNTAATCCNGNCNN

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.48
Offset:3
Orientation:forward strand
Alignment:GTCTAGTCTAGT--
---AAGGCAAGTGT

MA0037.2_GATA3/Jaspar

Match Rank:10
Score:0.48
Offset:1
Orientation:reverse strand
Alignment:GTCTAGTCTAGT
-TCTTATCT---