Information for 5-AAGAGTGTTTCA (Motif 5)


Reverse Opposite:

p-value:1e-35
log p-value:-8.072e+01
Information Content per bp:1.961
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif1.39%
Number of Background Sequences with motif9.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets184.6 +/- 97.4bp
Average Position of motif in Background192.8 +/- 117.9bp
Strand Bias (log2 ratio + to - strand density)-2.6
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0163.1_Six3/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AAGAGTGTTTCA-----
GATAGGGTATCACTAAT

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:AAGAGTGTTTCA--
----TGGTTTCAGT

PH0162.1_Six2/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AAGAGTGTTTCA-----
AATGGGGTATCACGTTT

PH0165.1_Six6_1/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AAGAGTGTTTCA-----
AATAGGGTATCAATTAT

PH0166.1_Six6_2/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AAGAGTGTTTCA-----
AATAGGGTATCAATATT

MA0099.2_JUN::FOS/Jaspar

Match Rank:6
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:AAGAGTGTTTCA
-----TGAGTCA

PH0161.1_Six1/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AAGAGTGTTTCA-----
GATGGGGTATCATTTTT

PB0059.1_Six6_1/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AAGAGTGTTTCA-----
AATAGGGTATCATATAT

MA0087.1_Sox5/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:AAGAGTGTTTCA
---ATTGTTA--

MA0489.1_JUN_(var.2)/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AAGAGTGTTTCA-
AGGAGATGACTCAT