Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1721)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 44554)	% of Background Sequences with Motif
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-17	-4.061e+01	0.0000	74.0	4.30%	579.2	1.30%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-11	-2.635e+01	0.0000	86.0	5.00%	971.9	2.17%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-4	-9.841e+00	0.0047	25.0	1.45%	263.2	0.59%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-4	-9.773e+00	0.0047	93.0	5.40%	1582.1	3.54%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-4	-9.266e+00	0.0050	98.0	5.69%	1712.1	3.83%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-3	-8.420e+00	0.0097	139.0	8.08%	2661.7	5.95%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-3	-7.959e+00	0.0132	54.0	3.14%	850.2	1.90%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-3	-6.967e+00	0.0311	311.0	18.07%	6837.5	15.29%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-3	-6.930e+00	0.0311	36.0	2.09%	528.1	1.18%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-2	-6.714e+00	0.0320	289.0	16.79%	6332.5	14.16%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-2	-6.557e+00	0.0341	64.0	3.72%	1117.1	2.50%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-2	-6.542e+00	0.0341	113.0	6.57%	2199.3	4.92%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-2	-6.302e+00	0.0372	144.0	8.37%	2928.0	6.55%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-2	-6.004e+00	0.0465	143.0	8.31%	2928.9	6.55%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-2	-5.998e+00	0.0465	24.0	1.39%	326.9	0.73%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-2	-5.917e+00	0.0465	9.0	0.52%	74.8	0.17%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-2	-5.486e+00	0.0644	233.0	13.54%	5116.8	11.44%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-2	-5.244e+00	0.0774	103.0	5.98%	2064.7	4.62%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-2	-4.991e+00	0.0944	30.0	1.74%	474.2	1.06%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-2	-4.887e+00	0.0996	171.0	9.94%	3692.2	8.26%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-1	-4.575e+00	0.1296	25.0	1.45%	388.0	0.87%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-1	-4.530e+00	0.1296	235.0	13.65%	5280.6	11.81%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e-1	-4.414e+00	0.1390	79.0	4.59%	1576.7	3.53%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-1	-4.217e+00	0.1621	32.0	1.86%	546.7	1.22%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-3.915e+00	0.2105	30.0	1.74%	517.3	1.16%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-3.895e+00	0.2105	399.0	23.18%	9446.1	21.12%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-3.787e+00	0.2217	55.0	3.20%	1074.6	2.40%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-1	-3.752e+00	0.2217	242.0	14.06%	5559.1	12.43%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-3.700e+00	0.2251	24.0	1.39%	400.9	0.90%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-1	-3.684e+00	0.2251	321.0	18.65%	7530.4	16.84%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-1	-3.514e+00	0.2536	414.0	24.06%	9896.0	22.13%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-1	-3.379e+00	0.2812	67.0	3.89%	1379.2	3.08%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-1	-3.348e+00	0.2813	19.0	1.10%	310.8	0.70%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1	-3.332e+00	0.2813	63.0	3.66%	1290.9	2.89%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-1	-3.267e+00	0.2875	23.0	1.34%	397.4	0.89%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-3.196e+00	0.3001	11.0	0.64%	155.4	0.35%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-1	-3.093e+00	0.3236	343.0	19.93%	8189.4	18.31%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-3.076e+00	0.3236	24.0	1.39%	427.9	0.96%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-1	-3.048e+00	0.3236	38.0	2.21%	738.6	1.65%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-1	-2.947e+00	0.3465	144.0	8.37%	3269.0	7.31%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1	-2.892e+00	0.3570	16.0	0.93%	265.7	0.59%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-1	-2.864e+00	0.3586	224.0	13.02%	5255.0	11.75%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-1	-2.783e+00	0.3799	413.0	24.00%	10023.3	22.41%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-1	-2.780e+00	0.3799	349.0	20.28%	8404.8	18.80%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.747e+00	0.3799	33.0	1.92%	644.3	1.44%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.747e+00	0.3799	33.0	1.92%	644.3	1.44%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-1	-2.714e+00	0.3799	29.0	1.69%	556.2	1.24%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-1	-2.592e+00	0.4117	220.0	12.78%	5202.4	11.63%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-1	-2.506e+00	0.4397	31.0	1.80%	614.2	1.37%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-1	-2.479e+00	0.4428	410.0	23.82%	10018.3	22.40%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-2.462e+00	0.4428	80.0	4.65%	1774.6	3.97%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-1	-2.458e+00	0.4428	266.0	15.46%	6380.1	14.27%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-1	-2.457e+00	0.4428	158.0	9.18%	3685.0	8.24%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-2.257e+00	0.5118	157.0	9.12%	3692.1	8.26%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-2.248e+00	0.5118	218.0	12.67%	5217.6	11.67%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-2.181e+00	0.5321	30.0	1.74%	613.5	1.37%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-2.149e+00	0.5402	16.0	0.93%	297.6	0.67%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.955e+00	0.6446	49.0	2.85%	1082.5	2.42%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.953e+00	0.6446	32.0	1.86%	677.8	1.52%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.947e+00	0.6446	147.0	8.54%	3498.0	7.82%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-1.938e+00	0.6446	276.0	16.04%	6748.8	15.09%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.908e+00	0.6446	51.0	2.96%	1135.5	2.54%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.897e+00	0.6446	4.0	0.23%	53.5	0.12%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.881e+00	0.6446	109.0	6.33%	2562.4	5.73%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.878e+00	0.6446	98.0	5.69%	2290.7	5.12%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.860e+00	0.6446	58.0	3.37%	1310.8	2.93%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-1.840e+00	0.6446	93.0	5.40%	2173.0	4.86%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.834e+00	0.6446	378.0	21.96%	9372.6	20.96%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.828e+00	0.6446	262.0	15.22%	6421.0	14.36%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.827e+00	0.6446	176.0	10.23%	4248.0	9.50%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.796e+00	0.6446	73.0	4.24%	1685.1	3.77%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.650e+00	0.7042	309.0	17.95%	7663.7	17.14%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.644e+00	0.7042	183.0	10.63%	4463.6	9.98%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.589e+00	0.7280	295.0	17.14%	7323.7	16.38%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.586e+00	0.7280	263.0	15.28%	6508.7	14.56%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.562e+00	0.7284	20.0	1.16%	424.8	0.95%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.502e+00	0.7633	106.0	6.16%	2552.9	5.71%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.487e+00	0.7648	76.0	4.42%	1804.7	4.04%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.486e+00	0.7648	458.0	26.61%	11534.0	25.79%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.483e+00	0.7648	173.0	10.05%	4247.4	9.50%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.467e+00	0.7648	67.0	3.89%	1583.4	3.54%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.455e+00	0.7648	83.0	4.82%	1984.2	4.44%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-1.431e+00	0.7648	77.0	4.47%	1838.1	4.11%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.400e+00	0.7751	126.0	7.32%	3076.4	6.88%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.382e+00	0.7795	184.0	10.69%	4551.6	10.18%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.362e+00	0.7862	531.0	30.85%	13461.5	30.10%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-1.338e+00	0.7961	467.0	27.14%	11820.6	26.43%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-1.332e+00	0.7961	56.0	3.25%	1329.9	2.97%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.322e+00	0.7961	143.0	8.31%	3524.5	7.88%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-1.287e+00	0.8098	4.0	0.23%	69.3	0.15%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.169e+00	0.9011	235.0	13.65%	5915.0	13.23%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.165e+00	0.9011	96.0	5.58%	2366.8	5.29%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.163e+00	0.9011	268.0	15.57%	6764.4	15.13%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.162e+00	0.9011	147.0	8.54%	3665.3	8.20%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.155e+00	0.9011	234.0	13.60%	5894.8	13.18%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.152e+00	0.9011	18.0	1.05%	409.0	0.91%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.090e+00	0.9146	186.0	10.81%	4683.1	10.47%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.071e+00	0.9235	120.0	6.97%	2999.1	6.71%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.068e+00	0.9235	83.0	4.82%	2056.9	4.60%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.063e+00	0.9235	190.0	11.04%	4794.0	10.72%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.042e+00	0.9235	98.0	5.69%	2444.5	5.47%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.042e+00	0.9235	212.0	12.32%	5366.5	12.00%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.041e+00	0.9235	15.0	0.87%	345.0	0.77%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-1.007e+00	0.9275	27.0	1.57%	648.5	1.45%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.004e+00	0.9275	51.0	2.96%	1255.9	2.81%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.003e+00	0.9275	21.0	1.22%	498.9	1.12%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-9.922e-01	0.9275	569.0	33.06%	14606.2	32.66%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-9.847e-01	0.9275	45.0	2.61%	1106.1	2.47%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-9.833e-01	0.9275	73.0	4.24%	1819.8	4.07%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-9.642e-01	0.9275	33.0	1.92%	805.5	1.80%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-9.415e-01	0.9277	40.0	2.32%	986.6	2.21%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-9.392e-01	0.9277	106.0	6.16%	2674.5	5.98%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-9.222e-01	0.9290	391.0	22.72%	10032.9	22.44%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-9.219e-01	0.9290	114.0	6.62%	2884.1	6.45%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-8.974e-01	0.9358	363.0	21.09%	9319.1	20.84%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-8.749e-01	0.9488	75.0	4.36%	1894.8	4.24%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-8.667e-01	0.9488	765.0	44.45%	19757.8	44.18%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-8.580e-01	0.9488	50.0	2.91%	1257.0	2.81%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-8.550e-01	0.9488	380.0	22.08%	9779.5	21.87%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-8.534e-01	0.9488	314.0	18.25%	8071.8	18.05%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-8.533e-01	0.9488	306.0	17.78%	7864.1	17.59%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-8.490e-01	0.9488	273.0	15.86%	7012.0	15.68%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-8.479e-01	0.9488	104.0	6.04%	2647.5	5.92%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-8.236e-01	0.9488	715.0	41.55%	18484.7	41.34%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-8.175e-01	0.9488	160.0	9.30%	4102.5	9.17%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-8.167e-01	0.9488	229.0	13.31%	5887.6	13.17%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-8.122e-01	0.9488	166.0	9.65%	4259.4	9.53%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-7.978e-01	0.9488	58.0	3.37%	1474.1	3.30%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-7.833e-01	0.9488	144.0	8.37%	3700.7	8.28%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-7.748e-01	0.9488	322.0	18.71%	8315.7	18.60%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-7.693e-01	0.9488	250.0	14.53%	6451.2	14.43%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-7.667e-01	0.9488	16.0	0.93%	398.3	0.89%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-7.346e-01	0.9522	410.0	23.82%	10619.6	23.75%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-7.250e-01	0.9542	170.0	9.88%	4395.8	9.83%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-7.174e-01	0.9543	523.0	30.39%	13563.2	30.33%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-6.950e-01	0.9688	44.0	2.56%	1134.5	2.54%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-6.657e-01	0.9903	21.0	1.22%	541.9	1.21%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-6.351e-01	1.0000	237.0	13.77%	6176.6	13.81%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-6.320e-01	1.0000	31.0	1.80%	808.3	1.81%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-6.125e-01	1.0000	302.0	17.55%	7880.8	17.62%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-6.124e-01	1.0000	112.0	6.51%	2929.3	6.55%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-6.068e-01	1.0000	102.0	5.93%	2670.5	5.97%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-6.068e-01	1.0000	102.0	5.93%	2670.3	5.97%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-6.030e-01	1.0000	57.0	3.31%	1495.2	3.34%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-5.959e-01	1.0000	3.0	0.17%	75.8	0.17%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-5.916e-01	1.0000	8.0	0.46%	209.4	0.47%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-5.906e-01	1.0000	46.0	2.67%	1210.6	2.71%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-5.838e-01	1.0000	474.0	27.54%	12375.1	27.67%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-5.825e-01	1.0000	134.0	7.79%	3515.2	7.86%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-5.710e-01	1.0000	54.0	3.14%	1425.3	3.19%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-5.522e-01	1.0000	47.0	2.73%	1246.4	2.79%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-5.455e-01	1.0000	42.0	2.44%	1116.5	2.50%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-5.281e-01	1.0000	165.0	9.59%	4350.6	9.73%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-5.256e-01	1.0000	389.0	22.60%	10202.0	22.81%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-5.154e-01	1.0000	186.0	10.81%	4906.7	10.97%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-5.116e-01	1.0000	29.0	1.69%	780.5	1.75%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-4.994e-01	1.0000	189.0	10.98%	4994.0	11.17%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-4.976e-01	1.0000	184.0	10.69%	4863.9	10.88%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-4.817e-01	1.0000	65.0	3.78%	1743.0	3.90%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-4.724e-01	1.0000	537.0	31.20%	14099.8	31.53%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-4.707e-01	1.0000	142.0	8.25%	3776.0	8.44%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-4.636e-01	1.0000	29.0	1.69%	791.5	1.77%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-4.585e-01	1.0000	30.0	1.74%	820.0	1.83%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-4.400e-01	1.0000	461.0	26.79%	12144.8	27.16%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-4.281e-01	1.0000	25.0	1.45%	693.0	1.55%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-4.278e-01	1.0000	160.0	9.30%	4271.8	9.55%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-4.258e-01	1.0000	403.0	23.42%	10641.3	23.80%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-4.086e-01	1.0000	237.0	13.77%	6307.7	14.11%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-4.078e-01	1.0000	30.0	1.74%	832.2	1.86%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-4.045e-01	1.0000	1077.0	62.58%	28195.3	63.05%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-3.970e-01	1.0000	655.0	38.06%	17241.8	38.56%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-3.889e-01	1.0000	89.0	5.17%	2415.4	5.40%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-3.781e-01	1.0000	105.0	6.10%	2845.6	6.36%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-3.777e-01	1.0000	169.0	9.82%	4538.6	10.15%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-3.766e-01	1.0000	245.0	14.24%	6540.4	14.63%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-3.764e-01	1.0000	8.0	0.46%	236.4	0.53%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-3.668e-01	1.0000	73.0	4.24%	2000.0	4.47%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-3.374e-01	1.0000	179.0	10.40%	4829.1	10.80%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-3.338e-01	1.0000	362.0	21.03%	9648.4	21.58%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-3.334e-01	1.0000	54.0	3.14%	1504.8	3.37%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-3.290e-01	1.0000	6.0	0.35%	186.9	0.42%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-3.267e-01	1.0000	76.0	4.42%	2098.6	4.69%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-3.204e-01	1.0000	303.0	17.61%	8111.6	18.14%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-3.143e-01	1.0000	71.0	4.13%	1970.4	4.41%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-3.079e-01	1.0000	251.0	14.58%	6753.0	15.10%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-2.951e-01	1.0000	258.0	14.99%	6949.3	15.54%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-2.909e-01	1.0000	236.0	13.71%	6372.3	14.25%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-2.892e-01	1.0000	701.0	40.73%	18558.2	41.50%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-2.753e-01	1.0000	101.0	5.87%	2798.0	6.26%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-2.642e-01	1.0000	161.0	9.36%	4407.7	9.86%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-2.571e-01	1.0000	93.0	5.40%	2594.9	5.80%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-2.550e-01	1.0000	82.0	4.76%	2299.1	5.14%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-2.489e-01	1.0000	335.0	19.47%	9026.6	20.19%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-2.478e-01	1.0000	424.0	24.64%	11368.8	25.42%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.423e-01	1.0000	46.0	2.67%	1328.1	2.97%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-2.333e-01	1.0000	785.0	45.61%	20821.1	46.56%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-2.295e-01	1.0000	157.0	9.12%	4330.1	9.68%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.996e-01	1.0000	137.0	7.96%	3822.4	8.55%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.930e-01	1.0000	462.0	26.84%	12442.7	27.83%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.873e-01	1.0000	16.0	0.93%	512.7	1.15%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-1.817e-01	1.0000	163.0	9.47%	4538.5	10.15%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.748e-01	1.0000	114.0	6.62%	3226.1	7.21%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.601e-01	1.0000	234.0	13.60%	6463.0	14.45%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.582e-01	1.0000	116.0	6.74%	3297.2	7.37%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.565e-01	1.0000	449.0	26.09%	12161.5	27.20%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.531e-01	1.0000	24.0	1.39%	759.1	1.70%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.512e-01	1.0000	254.0	14.76%	7009.5	15.67%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.511e-01	1.0000	320.0	18.59%	8763.2	19.60%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.498e-01	1.0000	53.0	3.08%	1579.3	3.53%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.456e-01	1.0000	145.0	8.43%	4096.2	9.16%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.419e-01	1.0000	9.0	0.52%	321.1	0.72%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.342e-01	1.0000	50.0	2.91%	1508.8	3.37%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.315e-01	1.0000	45.0	2.61%	1370.2	3.06%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.296e-01	1.0000	42.0	2.44%	1287.4	2.88%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.252e-01	1.0000	3.0	0.17%	132.7	0.30%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.172e-01	1.0000	746.0	43.35%	20026.9	44.79%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.143e-01	1.0000	24.0	1.39%	783.6	1.75%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.092e-01	1.0000	22.0	1.28%	728.7	1.63%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-9.783e-02	1.0000	913.0	53.05%	24419.1	54.61%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-8.557e-02	1.0000	205.0	11.91%	5815.4	13.00%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-8.534e-02	1.0000	1.0	0.06%	65.0	0.15%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-8.374e-02	1.0000	49.0	2.85%	1531.4	3.42%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-7.734e-02	1.0000	78.0	4.53%	2357.1	5.27%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-7.701e-02	1.0000	458.0	26.61%	12586.3	28.15%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-7.429e-02	1.0000	106.0	6.16%	3140.8	7.02%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-7.317e-02	1.0000	140.0	8.13%	4077.4	9.12%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-6.712e-02	1.0000	57.0	3.31%	1782.6	3.99%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-6.541e-02	1.0000	573.0	33.29%	15659.3	35.02%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-6.209e-02	1.0000	173.0	10.05%	5005.8	11.19%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-6.195e-02	1.0000	236.0	13.71%	6713.2	15.01%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-6.128e-02	1.0000	224.0	13.02%	6391.0	14.29%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-5.916e-02	1.0000	204.0	11.85%	5856.9	13.10%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-5.793e-02	1.0000	40.0	2.32%	1309.0	2.93%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-5.490e-02	1.0000	835.0	48.52%	22552.8	50.43%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-5.171e-02	1.0000	151.0	8.77%	4433.2	9.91%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-5.043e-02	1.0000	108.0	6.28%	3249.9	7.27%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-4.927e-02	1.0000	965.0	56.07%	25947.3	58.02%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-4.787e-02	1.0000	92.0	5.35%	2809.3	6.28%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-4.731e-02	1.0000	345.0	20.05%	9694.7	21.68%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-4.707e-02	1.0000	150.0	8.72%	4420.4	9.89%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-4.071e-02	1.0000	209.0	12.14%	6057.8	13.55%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-3.444e-02	1.0000	433.0	25.16%	12108.0	27.08%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-2.989e-02	1.0000	156.0	9.06%	4653.1	10.41%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-2.948e-02	1.0000	147.0	8.54%	4406.5	9.85%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.506e-02	1.0000	86.0	5.00%	2716.8	6.08%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-2.398e-02	1.0000	72.0	4.18%	2320.1	5.19%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.796e-02	1.0000	504.0	29.29%	14130.1	31.60%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.733e-02	1.0000	546.0	31.73%	15250.8	34.10%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.644e-02	1.0000	940.0	54.62%	25553.4	57.14%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.579e-02	1.0000	356.0	20.69%	10202.0	22.81%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.295e-02	1.0000	172.0	9.99%	5214.8	11.66%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-1.229e-02	1.0000	783.0	45.50%	21543.3	48.18%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-7.748e-03	1.0000	61.0	3.54%	2105.9	4.71%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-5.921e-03	1.0000	367.0	21.32%	10667.9	23.86%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-5.317e-03	1.0000	460.0	26.73%	13185.6	29.49%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-5.139e-03	1.0000	87.0	5.06%	2908.7	6.50%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-4.571e-03	1.0000	204.0	11.85%	6243.4	13.96%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-3.672e-03	1.0000	458.0	26.61%	13194.4	29.51%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-8.680e-04	1.0000	373.0	21.67%	11118.5	24.86%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-6.630e-04	1.0000	510.0	29.63%	14854.0	33.22%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-6.280e-04	1.0000	1144.0	66.47%	31320.9	70.04%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-5.350e-04	1.0000	8.0	0.46%	532.5	1.19%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-3.240e-04	1.0000	232.0	13.48%	7345.7	16.43%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-5.000e-06	1.0000	214.0	12.43%	7254.9	16.22%