Information for 1-TCACAKAGTTGA (Motif 1)


Reverse Opposite:

p-value:1e-111
log p-value:-2.578e+02
Information Content per bp:1.762
Number of Target Sequences with motif76.0
Percentage of Target Sequences with motif0.21%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets75.7 +/- 41.8bp
Average Position of motif in Background94.8 +/- 62.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:1
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----TCACAKAGTTGA---
NGAGGTCANNGAGTTCANNN

MA0074.1_RXRA::VDR/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TCACAKAGTTGA
GGGTCAACGAGTTCA

MA0512.1_Rxra/Jaspar

Match Rank:3
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TCACAKAGTTGA--
---CAAAGGTCAGA

PB0161.1_Rxra_2/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TCACAKAGTTGA----
TCGCGAAGGTTGTACT

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:5
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TCACAKAGTTGA
TGACCTARTT--

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.52
Offset:3
Orientation:forward strand
Alignment:TCACAKAGTTGA-
---CAAAGGTCAG

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:7
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:TCACAKAGTTGA---
-----TAATTGATTA

MA0117.1_Mafb/Jaspar

Match Rank:8
Score:0.51
Offset:7
Orientation:forward strand
Alignment:TCACAKAGTTGA---
-------GCTGACGC

MA0133.1_BRCA1/Jaspar

Match Rank:9
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:TCACAKAGTTGA
-----GTGTTGN

PH0168.1_Hnf1b/Jaspar

Match Rank:10
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:TCACAKAGTTGA-----
ANNNCTAGTTAACNGNN