Information for 1-AAAACTAGAC (Motif 11)


Reverse Opposite:

p-value:1e-43
log p-value:-9.931e+01
Information Content per bp:1.970
Number of Target Sequences with motif83.0
Percentage of Target Sequences with motif0.23%
Number of Background Sequences with motif11.8
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets79.1 +/- 42.9bp
Average Position of motif in Background69.2 +/- 41.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0497.1_MEF2C/Jaspar

Match Rank:1
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----AAAACTAGAC
ATGCTAAAAATAGAA

MA0052.2_MEF2A/Jaspar

Match Rank:2
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----AAAACTAGAC-
AGCTAAAAATAGCAT

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---AAAACTAGAC
DCYAAAAATAGM-

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AAAACTAGAC------
CAAATCCAGACATCACA

PB0141.1_Isgf3g_2/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--AAAACTAGAC--
GCAAAACATTACTA

PH0040.1_Hmbox1/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----AAAACTAGAC---
GANGTTAACTAGTTTNN

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AAAACTAGAC
CCAAAAATAG--

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:AAAACTAGAC--
----CCAGACAG

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:AAAACTAGAC----
----CCAGACRSVB

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:10
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:AAAACTAGAC--
----BCAGACWA