Information for 3-GAGTGTTTCA (Motif 15)


Reverse Opposite:

p-value:1e-32
log p-value:-7.476e+01
Information Content per bp:1.955
Number of Target Sequences with motif89.0
Percentage of Target Sequences with motif0.25%
Number of Background Sequences with motif18.5
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets81.2 +/- 44.3bp
Average Position of motif in Background87.2 +/- 42.7bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GAGTGTTTCA--
--TGGTTTCAGT

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGTTTCA
CTTGAGTGGCT--

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGTTTCA
TTGAGTGSTT--

MA0111.1_Spz1/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GAGTGTTTCA--
-AGGGTAACAGC

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGTTTCA
TTAAGTGCTT--

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGTTTCA
CTYRAGTGSY---

PB0059.1_Six6_1/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GAGTGTTTCA-----
AATAGGGTATCATATAT

MA0087.1_Sox5/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GAGTGTTTCA
-ATTGTTA--

MA0099.2_JUN::FOS/Jaspar

Match Rank:9
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GAGTGTTTCA
---TGAGTCA

PH0166.1_Six6_2/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GAGTGTTTCA-----
AATAGGGTATCAATATT