Information for 7-TCACAAAGAA (Motif 19)


Reverse Opposite:

p-value:1e-28
log p-value:-6.584e+01
Information Content per bp:1.974
Number of Target Sequences with motif88.0
Percentage of Target Sequences with motif0.25%
Number of Background Sequences with motif20.7
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets69.8 +/- 40.9bp
Average Position of motif in Background88.7 +/- 46.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0442.1_SOX10/Jaspar

Match Rank:1
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:TCACAAAGAA
--ACAAAG--

PB0166.1_Sox12_2/Jaspar

Match Rank:2
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----TCACAAAGAA--
AAACAGACAAAGGAAT

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:3
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-TCACAAAGAA
VRRACAAWGG-

PB0071.1_Sox4_1/Jaspar

Match Rank:4
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----TCACAAAGAA---
AGAAGAACAAAGGACTA

PB0061.1_Sox11_1/Jaspar

Match Rank:5
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----TCACAAAGAA---
ATAAGAACAAAGGACTA

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:6
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----TCACAAAGAA----
WNAGTCADAVTGAAACTN

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TCACAAAGAA
-RACAAWGG-

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:8
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TCACAAAGAA
GGAACAAAGR-

MA0143.3_Sox2/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TCACAAAGAA
-AACAAAGG-

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TCACAAAGAA
RNAACAATGG-