Information for 9-CCCCGAGCAA (Motif 23)


Reverse Opposite:

p-value:1e-25
log p-value:-5.876e+01
Information Content per bp:1.836
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif0.09%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets81.7 +/- 40.2bp
Average Position of motif in Background43.7 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCCCGAGCAA----
CCGCATAGCAACGGA

POL013.1_MED-1/Jaspar

Match Rank:2
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCCCGAGCAA
--CGGAGC--

PB0054.1_Rfx3_1/Jaspar

Match Rank:3
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CCCCGAGCAA--------
TGTGACCCTTAGCAACCGATTAA

PB0055.1_Rfx4_1/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CCCCGAGCAA----
TACCATAGCAACGGT

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCCCGAGCAA---
-SCCTAGCAACAG

PB0138.1_Irf4_2/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CCCCGAGCAA---
GNNACCGAGAATNNN

MA0155.1_INSM1/Jaspar

Match Rank:7
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CCCCGAGCAA
CGCCCCCTGACA-

PB0199.1_Zfp161_2/Jaspar

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CCCCGAGCAA-----
-GCCGCGCAGTGCGT

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CCCCGAGCAA
----CAGCC-

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---CCCCGAGCAA
GTCCCCAGGGGA-