Information for 1-CACGTGSA (Motif 28)


Reverse Opposite:

p-value:1e-23
log p-value:-5.521e+01
Information Content per bp:1.638
Number of Target Sequences with motif5668.0
Percentage of Target Sequences with motif15.83%
Number of Background Sequences with motif5024.0
Percentage of Background Sequences with motif13.93%
Average Position of motif in Targets80.7 +/- 44.4bp
Average Position of motif in Background78.8 +/- 47.9bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:1
Score:0.90
Offset:-2
Orientation:forward strand
Alignment:--CACGTGSA
GNCACGTG--

c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.90
Offset:-3
Orientation:forward strand
Alignment:---CACGTGSA
NNCCACGTGG-

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:3
Score:0.90
Offset:-2
Orientation:forward strand
Alignment:--CACGTGSA
GHCACGTG--

bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.89
Offset:-3
Orientation:reverse strand
Alignment:---CACGTGSA
NGKCACGTGM-

MA0004.1_Arnt/Jaspar

Match Rank:5
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:CACGTGSA
CACGTG--

MF0007.1_bHLH(zip)_class/Jaspar

Match Rank:6
Score:0.89
Offset:-2
Orientation:forward strand
Alignment:--CACGTGSA
ACCACGTG--

MA0464.1_Bhlhe40/Jaspar

Match Rank:7
Score:0.88
Offset:-2
Orientation:forward strand
Alignment:--CACGTGSA-
CTCACGTGCAC

n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.88
Offset:-3
Orientation:forward strand
Alignment:---CACGTGSA
NNCCACGTGG-

Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.88
Offset:-2
Orientation:forward strand
Alignment:--CACGTGSA--
ACCACGTGGTNN

c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--CACGTGSA
NCCACGTG--