Information for 2-CAATAGTC (Motif 29)


Reverse Opposite:

p-value:1e-22
log p-value:-5.230e+01
Information Content per bp:1.778
Number of Target Sequences with motif2120.0
Percentage of Target Sequences with motif5.92%
Number of Background Sequences with motif1718.3
Percentage of Background Sequences with motif4.76%
Average Position of motif in Targets77.5 +/- 44.7bp
Average Position of motif in Background77.8 +/- 46.3bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0077.1_SOX9/Jaspar

Match Rank:1
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CAATAGTC
GAACAATGG--

PB0183.1_Sry_2/Jaspar

Match Rank:2
Score:0.64
Offset:-8
Orientation:forward strand
Alignment:--------CAATAGTC-
TCACGGAACAATAGGTG

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CAATAGTC
CCAAAAATAG--

PB0073.1_Sox7_1/Jaspar

Match Rank:4
Score:0.63
Offset:-9
Orientation:forward strand
Alignment:---------CAATAGTC-----
AATAAAGAACAATAGAATTTCA

PB0002.1_Arid5a_1/Jaspar

Match Rank:5
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----CAATAGTC-
NNTNNCAATATTAG

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CAATAGTC
RACAAWGG--

MA0078.1_Sox17/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CAATAGTC
GACAATGNN-

PB0134.1_Hnf4a_2/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CAATAGTC------
GGCAAAAGTCCAATAA

PB0168.1_Sox14_2/Jaspar

Match Rank:9
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------CAATAGTC-
CTCACACAATGGCGC

PB0065.1_Sox15_1/Jaspar

Match Rank:10
Score:0.60
Offset:-7
Orientation:forward strand
Alignment:-------CAATAGTC--
TAGTGAACAATAGATTT