Information for 3-TTTATGTGAAGA (Motif 3)


Reverse Opposite:

p-value:1e-81
log p-value:-1.880e+02
Information Content per bp:1.979
Number of Target Sequences with motif71.0
Percentage of Target Sequences with motif0.20%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets79.9 +/- 40.6bp
Average Position of motif in Background78.7 +/- 34.8bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0104.1_Zscan4_1/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TTTATGTGAAGA----
NTNTATGTGCACATNNN

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TTTATGTGAAGA
TTTTATTRGN---

MA0025.1_NFIL3/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TTTATGTGAAGA
-TTATGTAACAT

MA0033.1_FOXL1/Jaspar

Match Rank:4
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TTTATGTGAAGA
--TATGTNTA--

PH0068.1_Hoxc13/Jaspar

Match Rank:5
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TTTATGTGAAGA
NAATTTTACGAGNTNN

PB0026.1_Gm397_1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TTTATGTGAAGA----
NNGTATGTGCACATNNN

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TTTATGTGAAGA--
--TATGTAAACANG

PH0048.1_Hoxa13/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----TTTATGTGAAGA
ANATTTTACGAGNNNN

PH0078.1_Hoxd13/Jaspar

Match Rank:9
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----TTTATGTGAAGA
NNANTTTTATTGGNNN-

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:10
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TTTATGTGAAGA
--AAAGTAAACA