Information for 3-CCTGTAGT (Motif 30)


Reverse Opposite:

p-value:1e-22
log p-value:-5.211e+01
Information Content per bp:1.882
Number of Target Sequences with motif1929.0
Percentage of Target Sequences with motif5.39%
Number of Background Sequences with motif1546.2
Percentage of Background Sequences with motif4.29%
Average Position of motif in Targets80.2 +/- 43.6bp
Average Position of motif in Background79.7 +/- 44.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCTGTAGT--
GCTGTGGTTT

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCTGTAGT---
NNHTGTGGTTWN

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CCTGTAGT---
-CTGTGGTTTN

MA0002.2_RUNX1/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCTGTAGT--
GTCTGTGGTTT

MA0032.1_FOXC1/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCTGTAGT
GGTAAGTA--

PH0084.1_Irx3_2/Jaspar

Match Rank:6
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------CCTGTAGT---
AATATACATGTAATATA

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCTGTAGT
GCTGTG--

PB0050.1_Osr1_1/Jaspar

Match Rank:8
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CCTGTAGT----
ATTTACAGTAGCAAAA

ETS(ETS)/Promoter/Homer

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCTGTAGT
AACCGGAAGT

PH0083.1_Irx3_1/Jaspar

Match Rank:10
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------CCTGTAGT---
AAAATACATGTAATACT