Information for 4-ACGAGGTC (Motif 33)


Reverse Opposite:

p-value:1e-18
log p-value:-4.359e+01
Information Content per bp:1.911
Number of Target Sequences with motif443.0
Percentage of Target Sequences with motif1.24%
Number of Background Sequences with motif282.8
Percentage of Background Sequences with motif0.78%
Average Position of motif in Targets78.1 +/- 47.3bp
Average Position of motif in Background77.2 +/- 42.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0200.1_Zfp187_2/Jaspar

Match Rank:1
Score:0.70
Offset:-6
Orientation:reverse strand
Alignment:------ACGAGGTC--
NNAGGGACAAGGGCNC

MA0071.1_RORA_1/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-ACGAGGTC-
ATCAAGGTCA

PB0057.1_Rxra_1/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---ACGAGGTC------
NTNNNGGGGTCANGNNN

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.65
Offset:3
Orientation:forward strand
Alignment:ACGAGGTC-
---AGGTCA

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:ACGAGGTC--
TCAAGGTCAN

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-ACGAGGTC-
AAYTAGGTCA

PB0014.1_Esrra_1/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---ACGAGGTC------
TATTCAAGGTCATGCGA

MA0059.1_MYC::MAX/Jaspar

Match Rank:8
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----ACGAGGTC
GACCACGTGGT-

MA0141.2_Esrrb/Jaspar

Match Rank:9
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---ACGAGGTC-
AGCTCAAGGTCA

MA0592.1_ESRRA/Jaspar

Match Rank:10
Score:0.63
Offset:0
Orientation:forward strand
Alignment:ACGAGGTC---
CCAAGGTCACA