Information for 10-TCNWTVAA (Motif 37)


Reverse Opposite:

p-value:1e-15
log p-value:-3.499e+01
Information Content per bp:1.511
Number of Target Sequences with motif2160.0
Percentage of Target Sequences with motif6.03%
Number of Background Sequences with motif1832.0
Percentage of Background Sequences with motif5.08%
Average Position of motif in Targets79.4 +/- 44.8bp
Average Position of motif in Background79.1 +/- 45.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0070.1_PBX1/Jaspar

Match Rank:1
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---TCNWTVAA-
CCATCAATCAAA

PB0005.1_Bbx_1/Jaspar

Match Rank:2
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----TCNWTVAA---
TAATTCAATGAAGTG

PB0028.1_Hbp1_1/Jaspar

Match Rank:3
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----TCNWTVAA----
ACTATGAATGAATGAT

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:4
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TCNWTVAA
GYCATCMATCAT

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TCNWTVAA-
NTTTCTNAGAAA

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TCNWTVAA
TCATCAATCA-

PH0134.1_Pbx1/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---TCNWTVAA------
TCACCCATCAATAAACA

STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer

Match Rank:8
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----TCNWTVAA--
NATTTCCNGGAAAT

MA0519.1_Stat5a::Stat5b/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---TCNWTVAA
ATTTCCAAGAA

PB0006.1_Bcl6b_1/Jaspar

Match Rank:10
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----TCNWTVAA----
TCTTTCGAGGAATTTG