Information for 13-ATCGAGAC (Motif 38)


Reverse Opposite:

p-value:1e-13
log p-value:-3.162e+01
Information Content per bp:1.953
Number of Target Sequences with motif244.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif145.6
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets75.8 +/- 48.0bp
Average Position of motif in Background78.9 +/- 39.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0139.1_Irf5_2/Jaspar

Match Rank:1
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---ATCGAGAC----
TTGACCGAGAATTCC

PB0035.1_Irf5_1/Jaspar

Match Rank:2
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----ATCGAGAC---
ATAAACCGAAACCAA

PB0036.1_Irf6_1/Jaspar

Match Rank:3
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---ATCGAGAC------
CTGATCGAAACCAAAGT

PB0034.1_Irf4_1/Jaspar

Match Rank:4
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---ATCGAGAC----
CGTATCGAAACCAAA

PB0138.1_Irf4_2/Jaspar

Match Rank:5
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---ATCGAGAC----
GNNACCGAGAATNNN

PB0140.1_Irf6_2/Jaspar

Match Rank:6
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---ATCGAGAC----
NNNACCGAGAGTNNN

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---ATCGAGAC------
CAAATCCAGACATCACA

PB0037.1_Isgf3g_1/Jaspar

Match Rank:8
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----ATCGAGAC---
CAAAATCGAAACTAA

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:9
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--ATCGAGAC
DGATCRATAN

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:ATCGAGAC--
--CCAGACAG