Information for 20-TGGCCCAT (Motif 40)


Reverse Opposite:

p-value:1e-6
log p-value:-1.433e+01
Information Content per bp:1.530
Number of Target Sequences with motif211.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif149.1
Percentage of Background Sequences with motif0.41%
Average Position of motif in Targets85.2 +/- 44.9bp
Average Position of motif in Background82.4 +/- 45.3bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0161.1_NFIC/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGGCCCAT
TTGGCA---

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TGGCCCAT---
-AGCCAATCGG

PB0118.1_Esrra_2/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TGGCCCAT----
NNNNTTGACCCCTNNNN

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TGGCCCAT--
ACTAGCCAATCA

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TGGCCCAT----
--GGCCATTAAC

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TGGCCCAT
TGACCT--

MA0491.1_JUND/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TGGCCCAT-
GGTGACTCATC

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGGCCCAT--
TGACCTARTT

PB0132.1_Hbp1_2/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGGCCCAT--------
TGTTCCCATTGTGTACT

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:TGGCCCAT
AGGCCTAG