Information for 22-TTAGACGT (Motif 42)


Reverse Opposite:

p-value:1e-4
log p-value:-1.008e+01
Information Content per bp:1.530
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif0.07%
Number of Background Sequences with motif10.3
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets84.1 +/- 46.9bp
Average Position of motif in Background70.1 +/- 38.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:1
Score:0.66
Offset:2
Orientation:forward strand
Alignment:TTAGACGT
--TGACGT

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:2
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TTAGACGT--
--RTACGTGC

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:3
Score:0.61
Offset:3
Orientation:forward strand
Alignment:TTAGACGT---
---TACGTGCV

PB0032.1_IRC900814_1/Jaspar

Match Rank:4
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TTAGACGT----
GNNATTTGTCGTAANN

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TTAGACGT--
--GGACGTGC

MA0018.2_CREB1/Jaspar

Match Rank:6
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TTAGACGT--
--TGACGTCA

PB0027.1_Gmeb1_1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TTAGACGT-------
GAGTGTACGTAAGATGG

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TTAGACGT
CCTTTGAWGT

MA0132.1_Pdx1/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TTAGACGT
AATTAG----

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TTAGACGT--
CCAGACRSVB