Information for 6-GCTTTGAGRSCT (Motif 6)


Reverse Opposite:

p-value:1e-73
log p-value:-1.703e+02
Information Content per bp:1.505
Number of Target Sequences with motif66.0
Percentage of Target Sequences with motif0.18%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets84.5 +/- 40.1bp
Average Position of motif in Background112.3 +/- 32.0bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GCTTTGAGRSCT
CCTTTGATGT--

MA0523.1_TCF7L2/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--GCTTTGAGRSCT
TNCCTTTGATCTTN

MA0151.1_ARID3A/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:GCTTTGAGRSCT
--TTTAAT----

PB0082.1_Tcf3_1/Jaspar

Match Rank:4
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GCTTTGAGRSCT-
NNTTCCTTTGATCTANA

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:5
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GCTTTGAGRSCT-
ATTTCCTTTGATCTATA

PB0040.1_Lef1_1/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GCTTTGAGRSCT-
AATCCCTTTGATCTATC

PB0083.1_Tcf7_1/Jaspar

Match Rank:7
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----GCTTTGAGRSCT-
NNTTCCTTTGATCTNNA

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:8
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCTTTGAGRSCT
TNCCTTTGATGT--

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:9
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCTTTGAGRSCT
CCTTTGAWGT--

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:10
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GCTTTGAGRSCT
--TTTGAAACCG