Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 35805)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 36061)	% of Background Sequences with Motif
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-6	-1.510e+01	0.0001	7093.0	19.81%	6768.6	18.77%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-4	-1.145e+01	0.0014	663.0	1.85%	564.0	1.56%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e-4	-1.120e+01	0.0014	2661.0	7.43%	2475.5	6.86%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-4	-1.111e+01	0.0014	5042.0	14.08%	4805.7	13.32%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-4	-1.098e+01	0.0014	3896.0	10.88%	3682.0	10.21%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-4	-1.047e+01	0.0014	1027.0	2.87%	911.8	2.53%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-4	-1.037e+01	0.0014	1348.0	3.76%	1217.3	3.38%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-4	-1.034e+01	0.0014	3020.0	8.43%	2834.9	7.86%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-3	-8.898e+00	0.0040	838.0	2.34%	743.8	2.06%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e-3	-8.618e+00	0.0048	1173.0	3.28%	1064.5	2.95%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-3	-8.184e+00	0.0067	11019.0	30.77%	10795.0	29.93%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-3	-8.087e+00	0.0068	9858.0	27.53%	9638.5	26.72%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-3	-7.731e+00	0.0089	1462.0	4.08%	1350.9	3.75%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-3	-7.067e+00	0.0161	2021.0	5.64%	1901.0	5.27%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-3	-7.057e+00	0.0161	1761.0	4.92%	1647.2	4.57%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-3	-6.957e+00	0.0161	5250.0	14.66%	5080.7	14.09%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-2	-6.869e+00	0.0161	371.0	1.04%	317.2	0.88%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-2	-6.728e+00	0.0176	2685.0	7.50%	2554.5	7.08%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-2	-6.602e+00	0.0189	730.0	2.04%	657.5	1.82%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-2	-6.562e+00	0.0189	506.0	1.41%	445.4	1.23%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-2	-6.386e+00	0.0212	2528.0	7.06%	2405.4	6.67%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-2	-6.170e+00	0.0251	1312.0	3.66%	1221.1	3.39%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-2	-5.868e+00	0.0325	2051.0	5.73%	1945.7	5.39%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-2	-5.806e+00	0.0331	6264.0	17.49%	6111.9	16.95%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e-2	-5.733e+00	0.0342	2094.0	5.85%	1990.0	5.52%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-2	-5.711e+00	0.0342	806.0	2.25%	737.8	2.05%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-2	-5.681e+00	0.0342	1126.0	3.14%	1046.3	2.90%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-2	-5.585e+00	0.0354	107.0	0.30%	82.7	0.23%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-2	-5.550e+00	0.0354	3031.0	8.46%	2913.4	8.08%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-2	-5.331e+00	0.0426	2306.0	6.44%	2203.6	6.11%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-2	-5.329e+00	0.0426	5000.0	13.96%	4866.5	13.49%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-2	-5.136e+00	0.0485	119.0	0.33%	94.8	0.26%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e-2	-4.941e+00	0.0572	230.0	0.64%	196.1	0.54%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-2	-4.878e+00	0.0591	16401.0	45.80%	16287.0	45.16%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e-2	-4.833e+00	0.0600	129.0	0.36%	104.1	0.29%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e-2	-4.745e+00	0.0638	566.0	1.58%	515.9	1.43%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-2	-4.709e+00	0.0643	2514.0	7.02%	2418.3	6.70%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-2	-4.703e+00	0.0643	5647.0	15.77%	5524.9	15.32%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-2	-4.622e+00	0.0666	1498.0	4.18%	1421.6	3.94%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-1	-4.454e+00	0.0768	237.0	0.66%	205.7	0.57%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-1	-4.448e+00	0.0768	3463.0	9.67%	3361.4	9.32%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-1	-4.448e+00	0.0768	5333.0	14.89%	5218.2	14.47%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-1	-4.410e+00	0.0768	4163.0	11.62%	4056.7	11.25%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e-1	-4.349e+00	0.0775	432.0	1.21%	390.3	1.08%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-1	-4.329e+00	0.0775	2141.0	5.98%	2057.3	5.70%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-4.181e+00	0.0877	2646.0	7.39%	2559.0	7.09%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-4.177e+00	0.0877	486.0	1.36%	443.9	1.23%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-1	-4.117e+00	0.0896	856.0	2.39%	801.0	2.22%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-1	-4.026e+00	0.0962	1272.0	3.55%	1208.6	3.35%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-1	-4.026e+00	0.0962	1583.0	4.42%	1513.1	4.20%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-1	-3.943e+00	0.1004	2710.0	7.57%	2626.7	7.28%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-1	-3.883e+00	0.1045	5636.0	15.74%	5535.2	15.35%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-3.745e+00	0.1177	334.0	0.93%	301.2	0.84%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1	-3.725e+00	0.1179	1136.0	3.17%	1079.4	2.99%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e-1	-3.706e+00	0.1180	1101.0	3.07%	1045.2	2.90%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-1	-3.679e+00	0.1190	100.0	0.28%	82.9	0.23%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-1	-3.622e+00	0.1238	5480.0	15.30%	5387.1	14.94%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-1	-3.500e+00	0.1375	11251.0	31.42%	11165.2	30.96%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-1	-3.497e+00	0.1375	2750.0	7.68%	2675.1	7.42%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-1	-3.476e+00	0.1375	921.0	2.57%	872.3	2.42%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-1	-3.408e+00	0.1433	5242.0	14.64%	5156.2	14.30%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-1	-3.401e+00	0.1433	1970.0	5.50%	1905.7	5.28%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-1	-3.379e+00	0.1433	3896.0	10.88%	3816.7	10.58%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-1	-3.293e+00	0.1533	893.0	2.49%	847.4	2.35%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-3.281e+00	0.1533	3819.0	10.66%	3742.0	10.37%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-1	-3.269e+00	0.1533	1540.0	4.30%	1483.1	4.11%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-1	-3.269e+00	0.1533	1930.0	5.39%	1868.5	5.18%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e-1	-3.238e+00	0.1533	3300.0	9.21%	3227.4	8.95%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e-1	-3.225e+00	0.1533	756.0	2.11%	714.8	1.98%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-1	-3.197e+00	0.1542	11.0	0.03%	6.6	0.02%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-1	-3.189e+00	0.1542	2073.0	5.79%	2011.5	5.58%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e-1	-3.144e+00	0.1580	5880.0	16.42%	5801.9	16.09%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-1	-2.965e+00	0.1864	1275.0	3.56%	1227.2	3.40%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-1	-2.928e+00	0.1908	45.0	0.13%	35.7	0.10%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-1	-2.915e+00	0.1908	2272.0	6.34%	2214.9	6.14%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e-1	-2.836e+00	0.2037	311.0	0.87%	286.2	0.79%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-1	-2.832e+00	0.2037	2387.0	6.67%	2330.7	6.46%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-2.810e+00	0.2037	2766.0	7.72%	2707.6	7.51%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-1	-2.650e+00	0.2362	177.0	0.49%	159.1	0.44%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-1	-2.467e+00	0.2799	1551.0	4.33%	1509.9	4.19%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-1	-2.464e+00	0.2799	2784.0	7.77%	2734.4	7.58%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1	-2.368e+00	0.3016	4315.0	12.05%	4264.8	11.82%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-1	-2.365e+00	0.3016	4411.0	12.32%	4360.2	12.09%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-1	-2.353e+00	0.3016	177.0	0.49%	161.4	0.45%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-1	-2.351e+00	0.3016	14245.0	39.78%	14225.0	39.44%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-2.294e+00	0.3096	420.0	1.17%	397.8	1.10%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-2.248e+00	0.3204	4983.0	13.91%	4936.9	13.69%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-2.214e+00	0.3278	2295.0	6.41%	2254.4	6.25%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-2.207e+00	0.3278	2128.0	5.94%	2088.3	5.79%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.008e+00	0.3939	261.0	0.73%	245.5	0.68%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-2.005e+00	0.3939	1766.0	4.93%	1733.1	4.80%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.971e+00	0.3996	1554.0	4.34%	1523.8	4.22%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.929e+00	0.4126	1758.0	4.91%	1727.7	4.79%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.895e+00	0.4223	1731.0	4.83%	1701.8	4.72%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.893e+00	0.4223	2311.0	6.45%	2279.8	6.32%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.837e+00	0.4379	2182.0	6.09%	2152.5	5.97%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.830e+00	0.4379	94.0	0.26%	85.2	0.24%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-1.778e+00	0.4551	231.0	0.65%	218.8	0.61%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.763e+00	0.4576	2298.0	6.42%	2270.6	6.30%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.742e+00	0.4625	473.0	1.32%	456.9	1.27%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.681e+00	0.4868	21.0	0.06%	17.9	0.05%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.670e+00	0.4874	1758.0	4.91%	1734.9	4.81%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.668e+00	0.4874	769.0	2.15%	750.4	2.08%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.646e+00	0.4892	963.0	2.69%	943.0	2.61%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.646e+00	0.4892	5740.0	16.03%	5720.8	15.86%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.631e+00	0.4892	4081.0	11.40%	4058.4	11.25%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.593e+00	0.5017	180.0	0.50%	170.9	0.47%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.559e+00	0.5143	3362.0	9.39%	3341.3	9.26%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.553e+00	0.5143	457.0	1.28%	443.1	1.23%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.530e+00	0.5196	1077.0	3.01%	1059.3	2.94%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.483e+00	0.5396	374.0	1.04%	362.7	1.01%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.467e+00	0.5438	763.0	2.13%	748.4	2.07%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.452e+00	0.5470	415.0	1.16%	403.4	1.12%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.445e+00	0.5470	263.0	0.73%	253.7	0.70%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.402e+00	0.5648	125.0	0.35%	118.2	0.33%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-1.388e+00	0.5682	180.0	0.50%	172.7	0.48%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.387e+00	0.5682	5075.0	14.17%	5066.7	14.05%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.376e+00	0.5682	6966.0	19.45%	6965.7	19.31%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.371e+00	0.5682	765.0	2.14%	752.2	2.09%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.328e+00	0.5833	750.0	2.09%	738.4	2.05%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-1.254e+00	0.6226	2941.0	8.21%	2932.6	8.13%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.200e+00	0.6518	113.0	0.32%	108.2	0.30%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.195e+00	0.6518	186.0	0.52%	180.4	0.50%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.185e+00	0.6518	487.0	1.36%	479.3	1.33%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-1.167e+00	0.6573	351.0	0.98%	344.2	0.95%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.124e+00	0.6809	554.0	1.55%	547.9	1.52%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.081e+00	0.7049	237.0	0.66%	232.0	0.64%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-1.073e+00	0.7052	627.0	1.75%	621.7	1.72%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.056e+00	0.7118	1293.0	3.61%	1288.6	3.57%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-9.639e-01	0.7745	2073.0	5.79%	2074.2	5.75%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-9.534e-01	0.7767	3482.0	9.72%	3490.8	9.68%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-9.526e-01	0.7767	198.0	0.55%	195.6	0.54%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-9.405e-01	0.7767	293.0	0.82%	290.7	0.81%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-9.365e-01	0.7767	932.0	2.60%	930.3	2.58%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-9.266e-01	0.7767	1429.0	3.99%	1429.7	3.96%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-9.108e-01	0.7808	1525.0	4.26%	1526.3	4.23%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-8.571e-01	0.8178	801.0	2.24%	802.0	2.22%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-7.943e-01	0.8645	809.0	2.26%	811.6	2.25%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-7.327e-01	0.9128	1885.0	5.26%	1896.7	5.26%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-7.311e-01	0.9128	471.0	1.32%	473.2	1.31%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-7.272e-01	0.9128	1541.0	4.30%	1550.1	4.30%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-7.049e-01	0.9187	368.0	1.03%	370.8	1.03%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-7.026e-01	0.9187	212.0	0.59%	213.5	0.59%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-7.026e-01	0.9187	212.0	0.59%	213.5	0.59%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-6.812e-01	0.9213	1925.0	5.38%	1939.7	5.38%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-6.800e-01	0.9213	421.0	1.18%	424.9	1.18%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-6.793e-01	0.9213	33.0	0.09%	33.1	0.09%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-6.720e-01	0.9213	1992.0	5.56%	2007.6	5.57%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-6.651e-01	0.9213	8916.0	24.90%	8982.7	24.90%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-6.651e-01	0.9213	23.0	0.06%	23.6	0.07%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-6.515e-01	0.9213	694.0	1.94%	700.9	1.94%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-6.395e-01	0.9213	527.0	1.47%	533.0	1.48%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-6.315e-01	0.9213	178.0	0.50%	180.9	0.50%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-6.075e-01	0.9338	1310.0	3.66%	1323.9	3.67%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-6.011e-01	0.9338	825.0	2.30%	834.1	2.31%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-5.894e-01	0.9386	1321.0	3.69%	1335.4	3.70%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-5.846e-01	0.9386	554.0	1.55%	561.1	1.56%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-5.819e-01	0.9386	849.0	2.37%	859.9	2.38%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-5.521e-01	0.9560	456.0	1.27%	463.0	1.28%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-5.451e-01	0.9567	203.0	0.57%	208.0	0.58%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-5.201e-01	0.9748	233.0	0.65%	238.4	0.66%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-5.078e-01	0.9807	1777.0	4.96%	1800.7	4.99%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-5.052e-01	0.9807	652.0	1.82%	663.5	1.84%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-5.019e-01	0.9807	96.0	0.27%	99.7	0.28%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-4.925e-01	0.9807	459.0	1.28%	468.7	1.30%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-4.852e-01	0.9807	2323.0	6.49%	2353.9	6.53%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-4.795e-01	0.9807	648.0	1.81%	660.1	1.83%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-4.675e-01	0.9846	1349.0	3.77%	1370.1	3.80%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-4.400e-01	1.0000	136.0	0.38%	141.4	0.39%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-4.353e-01	1.0000	1026.0	2.86%	1045.2	2.90%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-3.981e-01	1.0000	805.0	2.25%	823.6	2.28%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-3.902e-01	1.0000	172.0	0.48%	179.3	0.50%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-3.771e-01	1.0000	335.0	0.94%	346.3	0.96%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-3.725e-01	1.0000	2038.0	5.69%	2074.8	5.75%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-3.713e-01	1.0000	7007.0	19.57%	7094.4	19.67%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-3.652e-01	1.0000	114.0	0.32%	120.8	0.34%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-3.562e-01	1.0000	10032.0	28.01%	10148.7	28.14%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-3.523e-01	1.0000	772.0	2.16%	792.5	2.20%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-3.503e-01	1.0000	536.0	1.50%	552.3	1.53%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-3.480e-01	1.0000	698.0	1.95%	717.3	1.99%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-3.455e-01	1.0000	2659.0	7.42%	2705.3	7.50%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-3.398e-01	1.0000	71.0	0.20%	76.4	0.21%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-3.382e-01	1.0000	1030.0	2.88%	1056.0	2.93%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-3.322e-01	1.0000	153.0	0.43%	161.9	0.45%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-3.316e-01	1.0000	121.0	0.34%	128.7	0.36%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-3.314e-01	1.0000	347.0	0.97%	360.3	1.00%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-3.185e-01	1.0000	7827.0	21.86%	7930.4	21.99%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-2.996e-01	1.0000	2817.0	7.87%	2870.3	7.96%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.990e-01	1.0000	3556.0	9.93%	3618.7	10.03%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-2.985e-01	1.0000	4339.0	12.12%	4410.3	12.23%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-2.884e-01	1.0000	1425.0	3.98%	1460.2	4.05%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-2.844e-01	1.0000	91.0	0.25%	98.2	0.27%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.799e-01	1.0000	419.0	1.17%	436.1	1.21%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-2.797e-01	1.0000	3672.0	10.25%	3738.4	10.36%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-2.786e-01	1.0000	956.0	2.67%	985.0	2.73%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-2.630e-01	1.0000	6698.0	18.70%	6800.9	18.86%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-2.626e-01	1.0000	274.0	0.77%	288.3	0.80%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-2.457e-01	1.0000	1605.0	4.48%	1647.1	4.57%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-2.364e-01	1.0000	3100.0	8.66%	3165.3	8.78%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-2.182e-01	1.0000	596.0	1.66%	621.7	1.72%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-2.130e-01	1.0000	12.0	0.03%	15.7	0.04%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-2.108e-01	1.0000	2415.0	6.74%	2474.5	6.86%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-2.071e-01	1.0000	56.0	0.16%	63.6	0.18%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-2.022e-01	1.0000	2081.0	5.81%	2136.4	5.92%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.955e-01	1.0000	1044.0	2.92%	1081.3	3.00%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.928e-01	1.0000	263.0	0.73%	280.7	0.78%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.819e-01	1.0000	2452.0	6.85%	2517.0	6.98%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.789e-01	1.0000	2058.0	5.75%	2116.2	5.87%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.564e-01	1.0000	9750.0	27.22%	9909.7	27.47%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-1.534e-01	1.0000	1727.0	4.82%	1783.1	4.94%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.490e-01	1.0000	905.0	2.53%	944.1	2.62%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.437e-01	1.0000	118.0	0.33%	131.2	0.36%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-1.410e-01	1.0000	1384.0	3.86%	1436.0	3.98%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.208e-01	1.0000	86.0	0.24%	98.8	0.27%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.204e-01	1.0000	479.0	1.34%	509.2	1.41%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.146e-01	1.0000	126.0	0.35%	142.0	0.39%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.129e-01	1.0000	1911.0	5.34%	1978.6	5.49%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.047e-01	1.0000	3892.0	10.87%	3996.1	11.08%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.029e-01	1.0000	658.0	1.84%	696.6	1.93%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-8.353e-02	1.0000	1519.0	4.24%	1584.2	4.39%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-7.371e-02	1.0000	1747.0	4.88%	1820.6	5.05%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-6.077e-02	1.0000	3738.0	10.44%	3856.1	10.69%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-4.862e-02	1.0000	633.0	1.77%	680.2	1.89%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-4.334e-02	1.0000	599.0	1.67%	646.5	1.79%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-4.303e-02	1.0000	1714.0	4.79%	1797.8	4.98%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-4.151e-02	1.0000	3758.0	10.49%	3887.7	10.78%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-4.086e-02	1.0000	27.0	0.08%	37.8	0.10%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-2.641e-02	1.0000	31.0	0.09%	43.2	0.12%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.605e-02	1.0000	480.0	1.34%	527.6	1.46%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.564e-02	1.0000	667.0	1.86%	723.3	2.01%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-2.363e-02	1.0000	4380.0	12.23%	4536.9	12.58%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.724e-02	1.0000	445.0	1.24%	494.4	1.37%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.558e-02	1.0000	2220.0	6.20%	2336.4	6.48%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.428e-02	1.0000	658.0	1.84%	720.4	2.00%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.307e-02	1.0000	7141.0	19.94%	7362.5	20.41%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.201e-02	1.0000	2159.0	6.03%	2278.6	6.32%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.144e-02	1.0000	3173.0	8.86%	3320.8	9.21%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-8.911e-03	1.0000	162.0	0.45%	195.4	0.54%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-7.521e-03	1.0000	135.0	0.38%	166.7	0.46%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-7.509e-03	1.0000	3187.0	8.90%	3343.3	9.27%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-7.458e-03	1.0000	1900.0	5.31%	2019.8	5.60%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-6.978e-03	1.0000	17.0	0.05%	29.9	0.08%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-5.671e-03	1.0000	618.0	1.73%	687.8	1.91%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-5.613e-03	1.0000	366.0	1.02%	419.9	1.16%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-4.443e-03	1.0000	166.0	0.46%	203.4	0.56%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-3.946e-03	1.0000	7186.0	20.07%	7441.9	20.63%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.559e-03	1.0000	160.0	0.45%	199.5	0.55%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-2.024e-03	1.0000	3968.0	11.08%	4170.8	11.56%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-9.070e-04	1.0000	472.0	1.32%	546.2	1.51%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-8.890e-04	1.0000	373.0	1.04%	439.1	1.22%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-8.690e-04	1.0000	534.0	1.49%	613.1	1.70%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-8.590e-04	1.0000	382.0	1.07%	449.0	1.24%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-7.030e-04	1.0000	193.0	0.54%	242.4	0.67%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-1.090e-04	1.0000	1961.0	5.48%	2139.3	5.93%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-8.500e-05	1.0000	1533.0	4.28%	1693.3	4.69%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-4.100e-05	1.0000	667.0	1.86%	778.6	2.16%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-3.100e-05	1.0000	588.0	1.64%	694.9	1.93%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-1.300e-05	1.0000	3436.0	9.59%	3701.5	10.26%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-6.000e-06	1.0000	1002.0	2.80%	1153.8	3.20%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.000e-06	1.0000	3532.0	9.86%	3835.9	10.64%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.000e-06	1.0000	2590.0	7.23%	2856.8	7.92%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-0.000e+00	1.0000	1948.0	5.44%	2182.0	6.05%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-0.000e+00	1.0000	511.0	1.43%	642.9	1.78%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-0.000e+00	1.0000	631.0	1.76%	790.8	2.19%