Information for 19-GGTCACGA (Motif 26)


Reverse Opposite:

p-value:1e-16
log p-value:-3.844e+01
Information Content per bp:1.827
Number of Target Sequences with motif1036.0
Percentage of Target Sequences with motif4.66%
Number of Background Sequences with motif993.8
Percentage of Background Sequences with motif3.57%
Average Position of motif in Targets102.5 +/- 57.1bp
Average Position of motif in Background99.1 +/- 52.7bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.24
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GGTCACGA
AGGTCA---

PB0057.1_Rxra_1/Jaspar

Match Rank:2
Score:0.71
Offset:-7
Orientation:reverse strand
Alignment:-------GGTCACGA--
NTNNNGGGGTCANGNNN

PB0153.1_Nr2f2_2/Jaspar

Match Rank:3
Score:0.69
Offset:-7
Orientation:forward strand
Alignment:-------GGTCACGA-
CGCGCCGGGTCACGTA

MA0160.1_NR4A2/Jaspar

Match Rank:4
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GGTCACGA
AAGGTCAC--

MA0071.1_RORA_1/Jaspar

Match Rank:5
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----GGTCACGA
ATCAAGGTCA---

PB0049.1_Nr2f2_1/Jaspar

Match Rank:6
Score:0.68
Offset:-7
Orientation:forward strand
Alignment:-------GGTCACGA-
TCTCAAAGGTCACGAG

PB0053.1_Rara_1/Jaspar

Match Rank:7
Score:0.66
Offset:-7
Orientation:forward strand
Alignment:-------GGTCACGA-
TCTCAAAGGTCACCTG

PB0157.1_Rara_2/Jaspar

Match Rank:8
Score:0.65
Offset:-7
Orientation:forward strand
Alignment:-------GGTCACGA-
AGAGCGGGGTCAAGTA

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GGTCACGA
TCAAGGTCAN--

MA0067.1_Pax2/Jaspar

Match Rank:10
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GGTCACGA
AGTCACGC