Information for 20-TTTTTATA (Motif 27)


Reverse Opposite:

p-value:1e-15
log p-value:-3.634e+01
Information Content per bp:1.908
Number of Target Sequences with motif2660.0
Percentage of Target Sequences with motif11.96%
Number of Background Sequences with motif2859.2
Percentage of Background Sequences with motif10.26%
Average Position of motif in Targets99.0 +/- 56.1bp
Average Position of motif in Background99.1 +/- 55.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL012.1_TATA-Box/Jaspar

Match Rank:1
Score:0.87
Offset:-6
Orientation:reverse strand
Alignment:------TTTTTATA-
NNNNNNCTTTTATAN

MA0108.2_TBP/Jaspar

Match Rank:2
Score:0.87
Offset:-6
Orientation:reverse strand
Alignment:------TTTTTATA-
NNNNNNCTTTTATAN

MA0151.1_ARID3A/Jaspar

Match Rank:3
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:TTTTTATA
-TTTAAT-

PH0078.1_Hoxd13/Jaspar

Match Rank:4
Score:0.78
Offset:-3
Orientation:reverse strand
Alignment:---TTTTTATA-----
NNANTTTTATTGGNNN

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:5
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:TTTTTATA---
-TTTTATTRGN

PH0057.1_Hoxb13/Jaspar

Match Rank:6
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---TTTTTATA-----
NNAATTTTATTGGNTN

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:7
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:TTTTTATA---
-TTTAATTGCN

PH0064.1_Hoxb9/Jaspar

Match Rank:8
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---TTTTTATA-----
NGANTTTTATGGCTCN

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:9
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:TTTTTATA--
NTTTTATGAC

PB0148.1_Mtf1_2/Jaspar

Match Rank:10
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---TTTTTATA---
NNTTTTTCTTATNT