Information for 21-GACTTTAC (Motif 28)


Reverse Opposite:

p-value:1e-13
log p-value:-3.039e+01
Information Content per bp:1.530
Number of Target Sequences with motif157.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif102.3
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets96.8 +/- 56.0bp
Average Position of motif in Background108.4 +/- 51.7bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0134.1_Hnf4a_2/Jaspar

Match Rank:1
Score:0.70
Offset:-6
Orientation:reverse strand
Alignment:------GACTTTAC--
NNATTGGACTTTNGNN

PB0136.1_IRC900814_2/Jaspar

Match Rank:2
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------GACTTTAC--
TTTTACGACTTTCCAT

PH0077.1_Hoxd12/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GACTTTAC-------
NNNATTTTACGACNNTN

MA0105.3_NFKB1/Jaspar

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GACTTTAC-
GGGAATTTCCC

MA0107.1_RELA/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GACTTTAC
GGGAATTTCC

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:6
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GACTTTAC
GGGAATTTCC

PH0048.1_Hoxa13/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GACTTTAC-------
ANATTTTACGAGNNNN

MA0032.1_FOXC1/Jaspar

Match Rank:8
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:GACTTTAC-----
-----TACTNNNN

PH0076.1_Hoxd11/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GACTTTAC-------
ANNATTTTACGACNTNA

MA0131.1_HINFP/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GACTTTAC
GCGGACGTTN-