Information for 3-TGCAAGTGGATA (Motif 3)


Reverse Opposite:

p-value:1e-403
log p-value:-9.296e+02
Information Content per bp:1.673
Number of Target Sequences with motif232.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets105.1 +/- 54.6bp
Average Position of motif in Background124.0 +/- 22.6bp
Strand Bias (log2 ratio + to - strand density)4.7
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0114.1_Nkx2-5/Jaspar

Match Rank:1
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---TGCAAGTGGATA-
AAATTCAAGTGGNTTN

PH0111.1_Nkx2-2/Jaspar

Match Rank:2
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----TGCAAGTGGATA-
NANTTTCAAGTGGTTAN

MA0130.1_ZNF354C/Jaspar

Match Rank:3
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:TGCAAGTGGATA
-----GTGGAT-

MA0122.1_Nkx3-2/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TGCAAGTGGATA
-TTAAGTGGA--

PH0171.1_Nkx2-1/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TGCAAGTGGATA-
AANTTCAAGTGGCTTN

PH0115.1_Nkx2-6/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TGCAAGTGGATA-
AATNTTAAGTGGNTNN

PH0113.1_Nkx2-4/Jaspar

Match Rank:7
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TGCAAGTGGATA-
AATTTCAAGTGGCTTN

PH0004.1_Nkx3-2/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TGCAAGTGGATA--
NTNNTTAAGTGGTTANN

PB0111.1_Bhlhb2_2/Jaspar

Match Rank:9
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------TGCAAGTGGATA-----
TGTCATTACACGTGGAAGGCGGT

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TGCAAGTGGATA
AGAGGAAGTG----