Information for 25-CGGCCGCC (Motif 31)


Reverse Opposite:

p-value:1e-5
log p-value:-1.272e+01
Information Content per bp:1.596
Number of Target Sequences with motif964.0
Percentage of Target Sequences with motif4.33%
Number of Background Sequences with motif1043.8
Percentage of Background Sequences with motif3.74%
Average Position of motif in Targets96.2 +/- 56.4bp
Average Position of motif in Background99.5 +/- 50.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.28
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL006.1_BREu/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CGGCCGCC
AGCGCGCC

MA0131.1_HINFP/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CGGCCGCC
TAACGTCCGC-

YY1(Zf)/Promoter/Homer

Match Rank:3
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CGGCCGCC------
--GCCGCCATCTTG

PB0164.1_Smad3_2/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CGGCCGCC------
TACGCCCCGCCACTCTG

MA0024.2_E2F1/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CGGCCGCC--
CCTCCCGCCCN

PB0052.1_Plagl1_1/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CGGCCGCC-----
TTGGGGGCGCCCCTAG

PB0110.1_Bcl6b_2/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CGGCCGCC-------
ATCCCCGCCCCTAAAA

PB0008.1_E2F2_1/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CGGCCGCC-----
NTCGCGCGCCTTNNN

PB0009.1_E2F3_1/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CGGCCGCC-----
ANCGCGCGCCCTTNN

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CGGCCGCC
CTAGGCCT--