Information for 6-ACAGAGTTGAAY (Motif 5)


Reverse Opposite:

p-value:1e-295
log p-value:-6.811e+02
Information Content per bp:1.541
Number of Target Sequences with motif397.0
Percentage of Target Sequences with motif1.78%
Number of Background Sequences with motif36.5
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets99.7 +/- 55.2bp
Average Position of motif in Background104.3 +/- 59.9bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.41
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0068.1_Sox1_1/Jaspar

Match Rank:1
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:ACAGAGTTGAAY-----
-NNNTATTGAATTGNNN

MA0133.1_BRCA1/Jaspar

Match Rank:2
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:ACAGAGTTGAAY
---GTGTTGN--

PB0178.1_Sox8_2/Jaspar

Match Rank:3
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:ACAGAGTTGAAY--
NNTNTCATGAATGT

MA0512.1_Rxra/Jaspar

Match Rank:4
Score:0.55
Offset:1
Orientation:forward strand
Alignment:ACAGAGTTGAAY
-CAAAGGTCAGA

MA0100.2_Myb/Jaspar

Match Rank:5
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:ACAGAGTTGAAY
TGGCAGTTGN--

MA0081.1_SPIB/Jaspar

Match Rank:6
Score:0.53
Offset:4
Orientation:forward strand
Alignment:ACAGAGTTGAAY
----AGAGGAA-

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:7
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:ACAGAGTTGAAY---
-----TTTGAAACCG

MA0151.1_ARID3A/Jaspar

Match Rank:8
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:ACAGAGTTGAAY
------TTTAAT

PB0114.1_Egr1_2/Jaspar

Match Rank:9
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-ACAGAGTTGAAY---
TGCGGAGTGGGACTGG

PB0171.1_Sox18_2/Jaspar

Match Rank:10
Score:0.48
Offset:3
Orientation:forward strand
Alignment:ACAGAGTTGAAY-------
---GGACTGAATTCATGCC