Information for 7-GAAGATATTCCC (Motif 6)


Reverse Opposite:

p-value:1e-284
log p-value:-6.547e+02
Information Content per bp:1.805
Number of Target Sequences with motif216.0
Percentage of Target Sequences with motif0.97%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets98.9 +/- 56.1bp
Average Position of motif in Background86.4 +/- 51.9bp
Strand Bias (log2 ratio + to - strand density)-3.2
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0139.1_Pitx3/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GAAGATATTCCC---
GNNAGCTAATCCCCCN

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GAAGATATTCCC--
AGATGCTRCTRCCHT

POL008.1_DCE_S_I/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GAAGATATTCCC
NGAAGC-------

PH0121.1_Obox1/Jaspar

Match Rank:4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GAAGATATTCCC-----
NTAGTTAATCCCCTTAN

PH0123.1_Obox3/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GAAGATATTCCC-----
ATAGTTAATCCCCCNNA

PH0124.1_Obox5_1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GAAGATATTCCC----
NANANTTAATCCCNNNN

PH0015.1_Crx/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GAAGATATTCCC-----
-AGGCTAATCCCCAANG

PH0122.1_Obox2/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GAAGATATTCCC-----
ATAGTTAATCCCCCTCA

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GAAGATATTCCC
--GGAAATTCCC

PH0035.1_Gsc/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GAAGATATTCCC----
AATCGTTAATCCCTTTA