Information for 11-AGCAGTTTCGAA (Motif 9)


Reverse Opposite:

p-value:1e-219
log p-value:-5.054e+02
Information Content per bp:1.732
Number of Target Sequences with motif243.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif15.3
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets114.6 +/- 51.4bp
Average Position of motif in Background103.7 +/- 67.0bp
Strand Bias (log2 ratio + to - strand density)1.4
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.65
Offset:2
Orientation:forward strand
Alignment:AGCAGTTTCGAA
--CGGTTTCAAA

BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AGCAGTTTCGAA
BRRCVGTTDN---

PB0034.1_Irf4_1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGCAGTTTCGAA---
TNTGGTTTCGATACN

PB0042.1_Mafk_1/Jaspar

Match Rank:4
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----AGCAGTTTCGAA
AAGTCAGCANTTTTN--

MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------AGCAGTTTCGAA
HWWGTCAGCAWWTTT---

MA0496.1_MAFK/Jaspar

Match Rank:6
Score:0.57
Offset:-7
Orientation:forward strand
Alignment:-------AGCAGTTTCGAA
CTGAGTCAGCAATTT----

PB0035.1_Irf5_1/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:AGCAGTTTCGAA----
-NTGGTTTCGGTTNNN

MA0495.1_MAFF/Jaspar

Match Rank:8
Score:0.55
Offset:-8
Orientation:forward strand
Alignment:--------AGCAGTTTCGAA
GCTGAGTCAGCAATTTTT--

PB0003.1_Ascl2_1/Jaspar

Match Rank:9
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----AGCAGTTTCGAA-
NNNNAGCAGCTGCTGAN

AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer

Match Rank:10
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGCAGTTTCGAA
TGGCAGTTGG---