Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 22260)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 27865)	% of Background Sequences with Motif
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-10	-2.339e+01	0.0000	995.0	4.47%	1014.3	3.64%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-6	-1.567e+01	0.0000	1518.0	6.82%	1670.1	5.99%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-6	-1.521e+01	0.0000	2582.0	11.61%	2942.2	10.55%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-6	-1.449e+01	0.0000	4077.0	18.33%	4761.8	17.08%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-5	-1.154e+01	0.0005	2452.0	11.02%	2828.6	10.15%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-4	-1.069e+01	0.0010	414.0	1.86%	422.5	1.52%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e-4	-1.052e+01	0.0010	2721.0	12.23%	3167.3	11.36%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-4	-1.030e+01	0.0011	1892.0	8.50%	2168.2	7.78%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-3	-8.958e+00	0.0038	600.0	2.70%	646.1	2.32%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-3	-8.606e+00	0.0048	2347.0	10.55%	2740.8	9.83%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-3	-7.181e+00	0.0183	699.0	3.14%	776.1	2.78%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-3	-7.043e+00	0.0192	3267.0	14.69%	3889.8	13.95%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-2	-6.833e+00	0.0219	1054.0	4.74%	1202.8	4.31%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-2	-6.607e+00	0.0255	2360.0	10.61%	2788.0	10.00%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e-2	-6.352e+00	0.0307	4308.0	19.36%	5184.4	18.60%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-2	-6.046e+00	0.0391	2176.0	9.78%	2572.1	9.23%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-2	-5.804e+00	0.0468	2080.0	9.35%	2459.3	8.82%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-2	-5.583e+00	0.0552	433.0	1.95%	476.8	1.71%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-2	-5.502e+00	0.0567	996.0	4.48%	1149.0	4.12%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-2	-5.376e+00	0.0611	3483.0	15.66%	4189.1	15.03%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e-2	-5.317e+00	0.0617	569.0	2.56%	639.9	2.30%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-2	-5.286e+00	0.0617	919.0	4.13%	1058.2	3.80%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-2	-5.131e+00	0.0679	1918.0	8.62%	2273.4	8.16%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e-2	-5.102e+00	0.0679	4325.0	19.44%	5235.6	18.78%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-2	-4.980e+00	0.0726	762.0	3.43%	873.4	3.13%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-2	-4.866e+00	0.0782	4837.0	21.74%	5875.0	21.08%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-2	-4.724e+00	0.0868	5437.0	24.44%	6623.5	23.76%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-2	-4.671e+00	0.0882	1768.0	7.95%	2098.7	7.53%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-1	-4.388e+00	0.1131	2966.0	13.33%	3575.9	12.83%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-4.361e+00	0.1131	315.0	1.42%	347.5	1.25%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-1	-4.337e+00	0.1131	69.0	0.31%	65.8	0.24%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e-1	-4.325e+00	0.1131	579.0	2.60%	661.3	2.37%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-1	-4.161e+00	0.1248	14.0	0.06%	9.9	0.04%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-4.106e+00	0.1279	754.0	3.39%	874.7	3.14%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e-1	-4.097e+00	0.1279	151.0	0.68%	158.6	0.57%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-1	-4.035e+00	0.1297	2697.0	12.12%	3252.7	11.67%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-1	-3.985e+00	0.1327	4309.0	19.37%	5246.5	18.82%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-3.877e+00	0.1439	32.0	0.14%	27.3	0.10%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-1	-3.785e+00	0.1537	1559.0	7.01%	1859.6	6.67%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-1	-3.751e+00	0.1551	1431.0	6.43%	1703.0	6.11%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-1	-3.718e+00	0.1563	241.0	1.08%	265.1	0.95%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-1	-3.639e+00	0.1652	4448.0	19.99%	5429.8	19.48%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-3.630e+00	0.1652	357.0	1.60%	403.0	1.45%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-1	-3.615e+00	0.1652	583.0	2.62%	674.2	2.42%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e-1	-3.427e+00	0.1905	591.0	2.66%	686.5	2.46%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-3.367e+00	0.1979	7561.0	33.99%	9314.0	33.41%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-1	-3.307e+00	0.2058	19.0	0.09%	15.8	0.06%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-1	-3.301e+00	0.2058	177.0	0.80%	193.9	0.70%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e-1	-3.199e+00	0.2198	299.0	1.34%	338.3	1.21%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-3.057e+00	0.2482	423.0	1.90%	488.9	1.75%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-1	-2.939e+00	0.2738	426.0	1.91%	493.7	1.77%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1	-2.765e+00	0.3197	3655.0	16.43%	4474.1	16.05%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-2.749e+00	0.3197	458.0	2.06%	534.1	1.92%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-1	-2.667e+00	0.3395	151.0	0.68%	167.7	0.60%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-1	-2.661e+00	0.3395	1665.0	7.48%	2014.1	7.23%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e-1	-2.544e+00	0.3705	2436.0	10.95%	2970.6	10.66%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e-1	-2.499e+00	0.3805	2220.0	9.98%	2704.5	9.70%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-1	-2.450e+00	0.3929	781.0	3.51%	932.4	3.34%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-1	-2.447e+00	0.3929	564.0	2.54%	667.1	2.39%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-1	-2.400e+00	0.3992	1819.0	8.18%	2211.0	7.93%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-1	-2.325e+00	0.4233	6034.0	27.12%	7453.0	26.74%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-2.286e+00	0.4331	4001.0	17.98%	4922.8	17.66%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-2.235e+00	0.4484	250.0	1.12%	289.2	1.04%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-2.225e+00	0.4484	205.0	0.92%	235.5	0.84%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-2.219e+00	0.4484	624.0	2.80%	744.4	2.67%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-2.134e+00	0.4735	155.0	0.70%	176.9	0.63%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-2.079e+00	0.4927	2911.0	13.08%	3575.5	12.83%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.063e+00	0.4932	162.0	0.73%	185.1	0.66%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-2.016e+00	0.5098	1299.0	5.84%	1579.4	5.67%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.936e+00	0.5444	1222.0	5.49%	1486.1	5.33%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.903e+00	0.5547	924.0	4.15%	1119.1	4.01%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.861e+00	0.5702	350.0	1.57%	415.0	1.49%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.801e+00	0.5973	511.0	2.30%	613.2	2.20%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.759e+00	0.6141	888.0	3.99%	1078.4	3.87%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-1.747e+00	0.6141	1594.0	7.17%	1952.6	7.00%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.714e+00	0.6258	2029.0	9.12%	2493.5	8.94%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.712e+00	0.6258	28.0	0.13%	29.4	0.11%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.656e+00	0.6463	1855.0	8.34%	2279.5	8.18%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.629e+00	0.6552	2738.0	12.31%	3379.0	12.12%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.598e+00	0.6675	1178.0	5.30%	1441.9	5.17%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.503e+00	0.7248	568.0	2.55%	689.3	2.47%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.503e+00	0.7248	126.0	0.57%	147.4	0.53%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.499e+00	0.7248	2686.0	12.07%	3319.6	11.91%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.471e+00	0.7248	475.0	2.14%	575.3	2.06%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.364e+00	0.7943	2307.0	10.37%	2853.6	10.24%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-1.351e+00	0.7948	524.0	2.36%	638.5	2.29%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-1.344e+00	0.7948	612.0	2.75%	747.7	2.68%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.329e+00	0.7948	113.0	0.51%	133.4	0.48%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.321e+00	0.7948	94.0	0.42%	111.0	0.40%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.293e+00	0.8054	125.0	0.56%	148.3	0.53%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.250e+00	0.8314	22.0	0.10%	24.1	0.09%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-1.222e+00	0.8454	227.0	1.02%	274.7	0.99%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.173e+00	0.8784	55.0	0.25%	64.2	0.23%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.158e+00	0.8823	329.0	1.48%	401.9	1.44%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.092e+00	0.9329	336.0	1.51%	411.7	1.48%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.082e+00	0.9329	268.0	1.20%	327.2	1.17%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.080e+00	0.9329	526.0	2.36%	648.0	2.32%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.073e+00	0.9329	242.0	1.09%	295.1	1.06%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-1.020e+00	0.9618	338.0	1.52%	415.5	1.49%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.019e+00	0.9618	1744.0	7.84%	2167.5	7.78%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.007e+00	0.9618	5618.0	25.25%	7011.1	25.15%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.001e+00	0.9618	1809.0	8.13%	2249.4	8.07%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.001e+00	0.9618	2339.0	10.51%	2911.9	10.45%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-9.909e-01	0.9618	1053.0	4.73%	1306.2	4.69%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-9.895e-01	0.9618	2789.0	12.54%	3474.0	12.46%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-9.886e-01	0.9618	919.0	4.13%	1139.3	4.09%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-9.415e-01	0.9623	1319.0	5.93%	1640.8	5.89%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-8.869e-01	1.0000	674.0	3.03%	837.3	3.00%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-8.192e-01	1.0000	1647.0	7.40%	2056.8	7.38%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-8.092e-01	1.0000	2822.0	12.68%	3527.5	12.65%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-7.542e-01	1.0000	468.0	2.10%	584.3	2.10%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-7.514e-01	1.0000	100.0	0.45%	124.6	0.45%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-7.491e-01	1.0000	1429.0	6.42%	1787.3	6.41%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-7.093e-01	1.0000	589.0	2.65%	737.5	2.65%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-6.928e-01	1.0000	4539.0	20.40%	5687.4	20.40%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-6.667e-01	1.0000	1454.0	6.54%	1823.6	6.54%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-6.523e-01	1.0000	1691.0	7.60%	2121.5	7.61%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-6.450e-01	1.0000	78.0	0.35%	98.3	0.35%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-6.447e-01	1.0000	113.0	0.51%	142.8	0.51%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-6.226e-01	1.0000	306.0	1.38%	385.6	1.38%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-5.461e-01	1.0000	1678.0	7.54%	2112.5	7.58%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-5.199e-01	1.0000	2640.0	11.87%	3322.8	11.92%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-4.973e-01	1.0000	1539.0	6.92%	1941.3	6.96%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-4.939e-01	1.0000	336.0	1.51%	427.7	1.53%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-4.832e-01	1.0000	537.0	2.41%	681.4	2.44%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-4.737e-01	1.0000	1303.0	5.86%	1647.0	5.91%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-4.588e-01	1.0000	2157.0	9.70%	2721.2	9.76%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-4.536e-01	1.0000	12234.0	54.99%	15361.9	55.11%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-4.341e-01	1.0000	452.0	2.03%	576.6	2.07%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-4.267e-01	1.0000	192.0	0.86%	247.7	0.89%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-4.217e-01	1.0000	1709.0	7.68%	2161.6	7.75%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-4.215e-01	1.0000	140.0	0.63%	181.0	0.65%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-4.123e-01	1.0000	1640.0	7.37%	2075.2	7.44%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-4.018e-01	1.0000	120.0	0.54%	157.0	0.56%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-3.983e-01	1.0000	1639.0	7.37%	2075.7	7.45%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-3.949e-01	1.0000	1499.0	6.74%	1899.1	6.81%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-3.805e-01	1.0000	282.0	1.27%	363.7	1.30%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-3.706e-01	1.0000	848.0	3.81%	1080.6	3.88%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-3.698e-01	1.0000	715.0	3.21%	912.3	3.27%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-3.680e-01	1.0000	185.0	0.83%	240.4	0.86%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-3.629e-01	1.0000	2305.0	10.36%	2917.1	10.46%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-3.612e-01	1.0000	141.0	0.63%	184.9	0.66%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-3.555e-01	1.0000	806.0	3.62%	1028.5	3.69%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-3.281e-01	1.0000	1284.0	5.77%	1634.8	5.86%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-3.229e-01	1.0000	95.0	0.43%	126.1	0.45%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-3.163e-01	1.0000	1627.0	7.31%	2068.4	7.42%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-3.125e-01	1.0000	1096.0	4.93%	1398.3	5.02%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-3.028e-01	1.0000	408.0	1.83%	527.0	1.89%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-2.974e-01	1.0000	2278.0	10.24%	2891.2	10.37%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-2.923e-01	1.0000	542.0	2.44%	698.5	2.51%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-2.871e-01	1.0000	489.0	2.20%	631.1	2.26%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-2.702e-01	1.0000	1141.0	5.13%	1459.8	5.24%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-2.668e-01	1.0000	1355.0	6.09%	1730.6	6.21%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-2.628e-01	1.0000	4813.0	21.63%	6087.3	21.84%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-2.587e-01	1.0000	3558.0	15.99%	4509.7	16.18%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-2.521e-01	1.0000	1100.0	4.94%	1409.5	5.06%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.511e-01	1.0000	285.0	1.28%	373.2	1.34%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-2.500e-01	1.0000	65.0	0.29%	89.4	0.32%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-2.476e-01	1.0000	1241.0	5.58%	1588.6	5.70%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-2.424e-01	1.0000	742.0	3.34%	956.8	3.43%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-2.362e-01	1.0000	1583.0	7.12%	2022.4	7.25%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-2.239e-01	1.0000	5438.0	24.44%	6881.3	24.69%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-2.203e-01	1.0000	247.0	1.11%	326.3	1.17%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-2.174e-01	1.0000	485.0	2.18%	631.2	2.26%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-2.105e-01	1.0000	1959.0	8.81%	2501.3	8.97%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-2.083e-01	1.0000	357.0	1.60%	468.8	1.68%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-2.030e-01	1.0000	2144.0	9.64%	2736.5	9.82%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.905e-01	1.0000	22.0	0.10%	33.4	0.12%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.873e-01	1.0000	718.0	3.23%	931.8	3.34%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.818e-01	1.0000	578.0	2.60%	753.5	2.70%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.762e-01	1.0000	1415.0	6.36%	1819.0	6.53%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-1.685e-01	1.0000	530.0	2.38%	693.7	2.49%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.670e-01	1.0000	1131.0	5.08%	1459.6	5.24%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.635e-01	1.0000	112.0	0.50%	154.5	0.55%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.630e-01	1.0000	1314.0	5.91%	1692.1	6.07%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.612e-01	1.0000	6602.0	29.68%	8361.1	29.99%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.517e-01	1.0000	79.0	0.36%	111.6	0.40%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.436e-01	1.0000	186.0	0.84%	252.4	0.91%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.420e-01	1.0000	2969.0	13.35%	3791.2	13.60%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.393e-01	1.0000	7825.0	35.17%	9905.8	35.53%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.356e-01	1.0000	1615.0	7.26%	2079.5	7.46%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.257e-01	1.0000	446.0	2.00%	590.2	2.12%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.203e-01	1.0000	503.0	2.26%	664.5	2.38%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.167e-01	1.0000	2961.0	13.31%	3788.7	13.59%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.113e-01	1.0000	8653.0	38.90%	10956.5	39.30%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-1.090e-01	1.0000	1185.0	5.33%	1538.1	5.52%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.026e-01	1.0000	3520.0	15.82%	4499.5	16.14%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-1.026e-01	1.0000	557.0	2.50%	736.4	2.64%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-9.494e-02	1.0000	1228.0	5.52%	1596.9	5.73%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-9.018e-02	1.0000	58.0	0.26%	86.2	0.31%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-8.810e-02	1.0000	1041.0	4.68%	1359.4	4.88%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-8.152e-02	1.0000	853.0	3.83%	1120.5	4.02%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-7.953e-02	1.0000	9.0	0.04%	17.9	0.06%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-7.699e-02	1.0000	53.0	0.24%	80.5	0.29%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-7.593e-02	1.0000	401.0	1.80%	539.1	1.93%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-7.285e-02	1.0000	280.0	1.26%	382.9	1.37%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-7.165e-02	1.0000	7021.0	31.56%	8926.5	32.02%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-7.156e-02	1.0000	52.0	0.23%	79.6	0.29%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-6.777e-02	1.0000	1414.0	6.36%	1841.6	6.61%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-6.668e-02	1.0000	392.0	1.76%	529.4	1.90%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-6.637e-02	1.0000	267.0	1.20%	366.1	1.31%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-6.069e-02	1.0000	119.0	0.53%	171.4	0.61%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-5.850e-02	1.0000	127.0	0.57%	182.6	0.65%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-5.543e-02	1.0000	610.0	2.74%	814.9	2.92%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-5.420e-02	1.0000	2792.0	12.55%	3599.1	12.91%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.870e-02	1.0000	126.0	0.57%	182.6	0.65%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-4.870e-02	1.0000	126.0	0.57%	182.6	0.65%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-4.814e-02	1.0000	1311.0	5.89%	1717.5	6.16%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-4.665e-02	1.0000	3794.0	17.05%	4873.6	17.48%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-4.602e-02	1.0000	679.0	3.05%	906.8	3.25%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-4.306e-02	1.0000	655.0	2.94%	876.7	3.14%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-4.286e-02	1.0000	453.0	2.04%	614.3	2.20%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-4.167e-02	1.0000	1692.0	7.61%	2207.2	7.92%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-4.028e-02	1.0000	457.0	2.05%	620.8	2.23%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-3.894e-02	1.0000	40.0	0.18%	65.7	0.24%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-3.749e-02	1.0000	77.0	0.35%	117.2	0.42%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-3.219e-02	1.0000	205.0	0.92%	291.8	1.05%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-3.081e-02	1.0000	1920.0	8.63%	2505.8	8.99%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-2.793e-02	1.0000	10523.0	47.30%	13364.6	47.94%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-2.748e-02	1.0000	207.0	0.93%	295.5	1.06%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-2.261e-02	1.0000	109.0	0.49%	164.5	0.59%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-2.243e-02	1.0000	19.0	0.09%	36.8	0.13%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.980e-02	1.0000	1698.0	7.63%	2231.9	8.01%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.976e-02	1.0000	1204.0	5.41%	1597.8	5.73%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.884e-02	1.0000	158.0	0.71%	232.7	0.83%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.733e-02	1.0000	148.0	0.67%	219.6	0.79%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.730e-02	1.0000	1092.0	4.91%	1455.5	5.22%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.670e-02	1.0000	851.0	3.83%	1144.1	4.10%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.463e-02	1.0000	134.0	0.60%	201.2	0.72%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.449e-02	1.0000	1580.0	7.10%	2086.9	7.49%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.188e-02	1.0000	287.0	1.29%	409.3	1.47%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.116e-02	1.0000	1510.0	6.79%	2001.3	7.18%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.005e-02	1.0000	2866.0	12.88%	3738.6	13.41%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-9.399e-03	1.0000	4332.0	19.47%	5603.2	20.10%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-9.038e-03	1.0000	749.0	3.37%	1020.4	3.66%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-8.996e-03	1.0000	4320.0	19.42%	5589.7	20.05%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-8.634e-03	1.0000	1071.0	4.81%	1439.6	5.16%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-6.022e-03	1.0000	1479.0	6.65%	1972.2	7.07%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-5.721e-03	1.0000	122.0	0.55%	190.7	0.68%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-5.351e-03	1.0000	2940.0	13.22%	3847.9	13.80%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-3.914e-03	1.0000	3.0	0.01%	12.8	0.05%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-3.889e-03	1.0000	585.0	2.63%	815.5	2.93%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-3.779e-03	1.0000	418.0	1.88%	594.6	2.13%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-3.094e-03	1.0000	371.0	1.67%	533.2	1.91%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.926e-03	1.0000	323.0	1.45%	469.9	1.69%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-2.842e-03	1.0000	5220.0	23.46%	6761.1	24.25%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-2.636e-03	1.0000	312.0	1.40%	455.0	1.63%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-2.324e-03	1.0000	827.0	3.72%	1139.6	4.09%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.835e-03	1.0000	1666.0	7.49%	2233.6	8.01%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.699e-03	1.0000	93.0	0.42%	155.0	0.56%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.558e-03	1.0000	2900.0	13.04%	3822.1	13.71%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.257e-03	1.0000	463.0	2.08%	664.9	2.39%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.024e-03	1.0000	5192.0	23.34%	6751.1	24.22%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-7.260e-04	1.0000	6816.0	30.64%	8816.2	31.63%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-5.790e-04	1.0000	2045.0	9.19%	2742.0	9.84%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-3.390e-04	1.0000	31.0	0.14%	67.1	0.24%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-3.200e-04	1.0000	993.0	4.46%	1380.8	4.95%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.450e-04	1.0000	433.0	1.95%	641.0	2.30%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-9.500e-05	1.0000	3674.0	16.51%	4866.8	17.46%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-2.000e-05	1.0000	2588.0	11.63%	3494.6	12.54%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.900e-05	1.0000	312.0	1.40%	488.6	1.75%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.200e-05	1.0000	1248.0	5.61%	1752.7	6.29%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-8.000e-06	1.0000	51.0	0.23%	110.0	0.39%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-5.000e-06	1.0000	3266.0	14.68%	4389.2	15.75%